Sequence Similarity Clusters for the Entities in PDB 2NY3

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49007
95 % 4 15 3515
90 % 4 15 3552
70 % 24 120 166
50 % 24 120 196
40 % 24 120 213
30 % 24 123 222
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 34 723
95 % 6 39 831
90 % 6 39 865
70 % 6 39 906
50 % 6 39 950
40 % 6 39 972
30 % 6 39 967
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 1212
95 % 4 23 1483
90 % 111 500 4
70 % 382 1609 3
50 % 951 3902 1
40 % 952 3903 1
30 % 1048 4631 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 1210
95 % 4 23 1479
90 % 4 23 1510
70 % 462 1894 1
50 % 952 3902 1
40 % 953 3903 1
30 % 1049 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.