Sequence Similarity Clusters for the Entities in PDB 2NY3

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48341
95 % 4 15 3460
90 % 4 15 3497
70 % 24 118 167
50 % 24 118 198
40 % 24 118 214
30 % 24 121 225
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 34 702
95 % 6 39 782
90 % 6 39 818
70 % 6 39 864
50 % 6 39 928
40 % 6 39 955
30 % 6 39 950
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 1196
95 % 4 23 1465
90 % 105 475 4
70 % 371 1565 3
50 % 929 3804 1
40 % 930 3805 1
30 % 1022 4512 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 1194
95 % 4 23 1461
90 % 4 23 1490
70 % 451 1846 1
50 % 930 3804 1
40 % 931 3805 1
30 % 1023 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.