Sequence Similarity Clusters for the Entities in PDB 2NY3

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49756
95 % 4 15 3563
90 % 4 15 3600
70 % 24 121 167
50 % 24 121 199
40 % 24 121 217
30 % 24 124 223
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 34 730
95 % 6 39 848
90 % 6 39 883
70 % 6 39 924
50 % 6 39 972
40 % 6 39 987
30 % 6 39 982
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 1241
95 % 4 23 1515
90 % 115 518 3
70 % 394 1639 3
50 % 979 3985 1
40 % 980 3986 1
30 % 1077 4715 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 1239
95 % 4 23 1511
90 % 4 23 1543
70 % 476 1932 1
50 % 980 3985 1
40 % 981 3986 1
30 % 1078 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.