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HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E267C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY3
Sequence Clusters for the Sequence Entities in PDB 2NY3
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43393
95% 4 15 3045
90% 4 15 3083
70% 4 29 1085
50% 4 29 1145
40% 4 29 1168
30% 4 31 1066
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 30 843
95% 6 35 945
90% 6 35 964
70% 6 35 997
50% 6 35 1042
40% 6 35 1067
30% 6 35 1046
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 18 1510
95% 4 21 1667
90% 84 379 5
70% 310 1337 3
50% 761 3184 1
40% 762 3185 1
30% 836 3767 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 18 1509
95% 4 21 1665
90% 4 21 1712
70% 369 1535 2
50% 762 3184 1
40% 763 3185 1
30% 837 3767 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.