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HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E267C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY3
Sequence Clusters for the Sequence Entities in PDB 2NY3
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44229
95% 4 15 3094
90% 4 15 3132
70% 4 29 1103
50% 4 29 1160
40% 4 29 1186
30% 4 31 1081
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 30 857
95% 6 35 968
90% 6 35 988
70% 6 35 1018
50% 6 35 1059
40% 6 35 1086
30% 6 35 1063
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 18 1542
95% 4 21 1696
90% 90 410 4
70% 319 1377 3
50% 783 3274 1
40% 784 3275 1
30% 860 3863 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 18 1541
95% 4 21 1694
90% 4 21 1741
70% 380 1580 2
50% 784 3274 1
40% 785 3275 1
30% 861 3863 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.