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HIV-1 gp120 Envelope Glycoprotein (T123C, T257S, S334A, S375W, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY2
Sequence Clusters for the Sequence Entities in PDB 2NY2
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43953
95% 2 15 3086
90% 2 15 3124
70% 2 29 1096
50% 2 29 1156
40% 2 29 1181
30% 2 31 1076
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 30 851
95% 3 35 961
90% 3 35 981
70% 3 35 1011
50% 3 35 1053
40% 3 35 1080
30% 3 35 1057
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 1535
95% 2 21 1689
90% 76 389 5
70% 282 1358 3
50% 697 3236 1
40% 698 3237 1
30% 762 3821 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 1534
95% 2 21 1687
90% 2 21 1735
70% 340 1561 2
50% 698 3236 1
40% 699 3237 1
30% 763 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.