Sequence Similarity Clusters for the Entities in PDB 2NY2

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54685
95 % 2 15 3968
90 % 2 15 4005
70 % 20 126 178
50 % 20 126 221
40 % 20 126 240
30 % 20 129 248
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 38 698
95 % 3 43 833
90 % 3 43 863
70 % 3 43 895
50 % 3 43 940
40 % 3 43 967
30 % 3 43 939
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1264
95 % 4 32 1109
90 % 147 695 3
70 % 498 2274 1
50 % 1029 4607 1
40 % 1029 4607 1
30 % 1130 5422 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1262
95 % 2 25 1386
90 % 2 25 1411
70 % 499 2232 2
50 % 1030 4607 1
40 % 1030 4607 1
30 % 1131 5422 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.