Sequence Similarity Clusters for the Entities in PDB 2NY2

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48789
95 % 2 15 3494
90 % 2 15 3531
70 % 20 120 165
50 % 20 120 196
40 % 20 120 212
30 % 20 123 222
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 34 719
95 % 3 39 816
90 % 3 39 853
70 % 3 39 902
50 % 3 39 947
40 % 3 39 969
30 % 3 39 963
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1208
95 % 2 23 1478
90 % 94 485 4
70 % 340 1587 3
50 % 855 3858 1
40 % 856 3859 1
30 % 937 4587 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1206
95 % 2 23 1474
90 % 2 23 1504
70 % 417 1872 1
50 % 856 3858 1
40 % 857 3859 1
30 % 938 4587 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.