POP-OUT | CLOSE

An Information Portal to 107049 Biological Macromolecular Structures

HIV-1 gp120 Envelope Glycoprotein (T123C, T257S, S334A, S375W, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY2
Sequence Clusters for the Sequence Entities in PDB 2NY2
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43469
95% 2 15 3051
90% 2 15 3089
70% 2 29 1085
50% 2 29 1145
40% 2 29 1170
30% 2 31 1068
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 30 843
95% 3 35 947
90% 3 35 965
70% 3 35 998
50% 3 35 1043
40% 3 35 1069
30% 3 35 1048
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 1514
95% 2 21 1668
90% 73 380 5
70% 277 1339 3
50% 683 3188 1
40% 684 3189 1
30% 748 3771 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 1513
95% 2 21 1666
90% 2 21 1713
70% 333 1537 2
50% 684 3188 1
40% 685 3189 1
30% 749 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.