Sequence Similarity Clusters for the Entities in PDB 2NY2

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51981
95 % 2 15 3766
90 % 2 15 3801
70 % 20 125 171
50 % 20 125 209
40 % 20 125 232
30 % 20 128 238
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 715
95 % 3 40 857
90 % 3 40 889
70 % 3 40 918
50 % 3 40 962
40 % 3 40 986
30 % 3 40 970
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1162
95 % 2 24 1439
90 % 131 631 3
70 % 382 1750 2
50 % 960 4268 1
40 % 960 4268 1
30 % 1050 5034 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1160
95 % 2 24 1437
90 % 2 24 1462
70 % 465 2064 1
50 % 961 4268 1
40 % 961 4268 1
30 % 1051 5034 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.