Sequence Similarity Clusters for the Entities in PDB 2NY2

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49341
95 % 2 15 3536
90 % 2 15 3573
70 % 20 121 166
50 % 20 121 198
40 % 20 121 214
30 % 20 124 223
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 34 727
95 % 3 39 841
90 % 3 39 875
70 % 3 39 917
50 % 3 39 961
40 % 3 39 980
30 % 3 39 974
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1221
95 % 2 23 1491
90 % 98 503 3
70 % 345 1617 3
50 % 869 3934 1
40 % 870 3935 1
30 % 951 4663 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1219
95 % 2 23 1487
90 % 2 23 1518
70 % 424 1909 1
50 % 870 3934 1
40 % 871 3935 1
30 % 952 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.