Sequence Similarity Clusters for the Entities in PDB 2NY2

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53060
95 % 2 15 3845
90 % 2 15 3878
70 % 20 126 179
50 % 20 126 216
40 % 20 126 238
30 % 20 129 242
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 37 712
95 % 3 42 844
90 % 3 42 879
70 % 3 42 911
50 % 3 42 962
40 % 3 42 982
30 % 3 42 959
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1202
95 % 2 24 1475
90 % 135 651 3
70 % 389 1790 2
50 % 986 4403 1
40 % 986 4403 1
30 % 1080 5191 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 1200
95 % 2 24 1473
90 % 2 24 1497
70 % 478 2129 1
50 % 987 4403 1
40 % 987 4403 1
30 % 1081 5191 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.