Sequence Similarity Clusters for the Entities in PDB 2NY2

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48340
95 % 2 15 3460
90 % 2 15 3497
70 % 20 118 167
50 % 20 118 198
40 % 20 118 214
30 % 20 121 225
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 34 702
95 % 3 39 782
90 % 3 39 818
70 % 3 39 864
50 % 3 39 928
40 % 3 39 955
30 % 3 39 950
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1196
95 % 2 23 1465
90 % 93 475 4
70 % 334 1565 3
50 % 843 3804 1
40 % 844 3805 1
30 % 923 4512 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 1194
95 % 2 23 1461
90 % 2 23 1490
70 % 411 1846 1
50 % 844 3804 1
40 % 845 3805 1
30 % 924 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.