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HIV-1 gp120 Envelope Glycoprotein (T123C, T257S, S334A, S375W, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY2
Sequence Clusters for the Sequence Entities in PDB 2NY2
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44456
95% 2 15 3113
90% 2 15 3153
70% 2 29 1109
50% 2 29 1168
40% 2 29 1193
30% 2 31 1090
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 30 863
95% 3 35 978
90% 3 35 998
70% 3 35 1026
50% 3 35 1066
40% 3 35 1092
30% 3 35 1070
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 1549
95% 2 21 1704
90% 77 413 4
70% 288 1391 3
50% 712 3311 1
40% 713 3312 1
30% 779 3921 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 1548
95% 2 21 1702
90% 2 21 1749
70% 345 1595 2
50% 713 3311 1
40% 714 3312 1
30% 780 3921 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.