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HIV-1 gp120 Envelope Glycoprotein (T123C, T257S, S334A, S375W, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY2
Sequence Clusters for the Sequence Entities in PDB 2NY2
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41795
95% 2 15 2838
90% 2 15 2886
70% 2 27 1157
50% 2 27 1221
40% 2 27 1256
30% 2 29 1158
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 28 925
95% 3 33 985
90% 3 33 1009
70% 3 33 1041
50% 3 33 1110
40% 3 33 1137
30% 3 33 1124
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 17 1441
95% 2 20 1588
90% 69 366 4
70% 266 1292 3
50% 659 3072 1
40% 660 3073 1
30% 722 3633 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 17 1438
95% 2 20 1584
90% 2 20 1632
70% 321 1481 2
50% 660 3072 1
40% 661 3073 1
30% 723 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.