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HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY1
Sequence Clusters for the Sequence Entities in PDB 2NY1
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43699
95% 5 15 3071
90% 5 15 3108
70% 5 29 1090
50% 5 29 1149
40% 5 29 1176
30% 5 31 1074
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 30 850
95% 7 35 954
90% 7 35 973
70% 7 35 1005
50% 7 35 1046
40% 7 35 1076
30% 7 35 1055
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 18 1526
95% 5 21 1681
90% 92 389 4
70% 325 1349 3
50% 800 3210 1
40% 801 3211 1
30% 877 3793 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 18 1525
95% 5 21 1679
90% 5 21 1727
70% 387 1548 2
50% 801 3210 1
40% 802 3211 1
30% 878 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.