Sequence Similarity Clusters for the Entities in PDB 2NY1

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49832
95 % 5 15 3570
90 % 5 15 3610
70 % 26 121 167
50 % 26 121 199
40 % 26 121 218
30 % 26 124 223
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 34 731
95 % 7 39 854
90 % 7 39 886
70 % 7 39 926
50 % 7 39 973
40 % 7 39 988
30 % 7 39 983
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 1245
95 % 5 23 1520
90 % 138 582 3
70 % 407 1642 3
50 % 1020 3997 1
40 % 1021 3998 1
30 % 1123 4727 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 1243
95 % 5 23 1516
90 % 5 23 1547
70 % 495 1938 1
50 % 1021 3997 1
40 % 1022 3998 1
30 % 1124 4727 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.