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HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY1
Sequence Clusters for the Sequence Entities in PDB 2NY1
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42678
95% 5 15 2968
90% 5 15 3006
70% 5 28 1097
50% 5 28 1168
40% 5 28 1186
30% 5 30 1108
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 29 856
95% 7 34 961
90% 7 34 979
70% 7 34 1007
50% 7 34 1057
40% 7 34 1086
30% 7 34 1063
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 17 1547
95% 5 20 1695
90% 87 374 5
70% 316 1317 3
50% 780 3136 1
40% 781 3137 1
30% 857 3713 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 17 1543
95% 5 20 1691
90% 5 20 1737
70% 377 1511 2
50% 781 3136 1
40% 782 3137 1
30% 858 3713 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.