Sequence Similarity Clusters for the Entities in PDB 2NY1

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52756
95 % 5 15 3821
90 % 5 15 3855
70 % 26 126 179
50 % 26 126 216
40 % 26 126 238
30 % 26 129 240
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 35 744
95 % 7 40 896
90 % 7 40 927
70 % 7 40 953
50 % 7 40 987
40 % 7 40 1005
30 % 7 40 980
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 21 1193
95 % 5 24 1472
90 % 153 644 3
70 % 438 1773 2
50 % 1111 4363 1
40 % 1111 4363 1
30 % 1231 5147 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 21 1191
95 % 5 24 1470
90 % 5 24 1493
70 % 536 2109 1
50 % 1112 4363 1
40 % 1112 4363 1
30 % 1232 5147 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.