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HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY1
Sequence Clusters for the Sequence Entities in PDB 2NY1
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42063
95% 5 15 2918
90% 5 15 2961
70% 5 28 1051
50% 5 28 1138
40% 5 28 1159
30% 5 30 1080
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 29 816
95% 7 34 893
90% 7 34 915
70% 7 34 954
50% 7 34 1033
40% 7 34 1066
30% 7 34 1043
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 17 1518
95% 5 20 1669
90% 86 368 4
70% 312 1297 3
50% 772 3090 1
40% 773 3091 1
30% 847 3653 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 17 1515
95% 5 20 1665
90% 5 20 1711
70% 373 1490 2
50% 773 3090 1
40% 774 3091 1
30% 848 3653 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.