POP-OUT | CLOSE
 
HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY1
Sequence Clusters for the Sequence Entities in PDB 2NY1
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42139
95% 5 15 2920
90% 5 15 2963
70% 5 28 1079
50% 5 28 1151
40% 5 28 1167
30% 5 30 1088
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 29 847
95% 7 34 948
90% 7 34 969
70% 7 34 995
50% 7 34 1048
40% 7 34 1074
30% 7 34 1051
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 17 1527
95% 5 20 1676
90% 86 368 5
70% 312 1297 3
50% 772 3090 1
40% 773 3091 1
30% 847 3654 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 17 1524
95% 5 20 1672
90% 5 20 1719
70% 373 1490 2
50% 773 3090 1
40% 774 3091 1
30% 848 3654 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.