Sequence Similarity Clusters for the Entities in PDB 2NY1

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52064
95 % 5 15 3772
90 % 5 15 3805
70 % 26 125 172
50 % 26 125 211
40 % 26 125 234
30 % 26 128 239
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 35 717
95 % 7 40 859
90 % 7 40 891
70 % 7 40 922
50 % 7 40 966
40 % 7 40 989
30 % 7 40 971
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 21 1166
95 % 5 24 1442
90 % 149 632 3
70 % 432 1752 2
50 % 1083 4272 1
40 % 1083 4272 1
30 % 1195 5038 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 21 1164
95 % 5 24 1440
90 % 5 24 1466
70 % 522 2066 1
50 % 1084 4272 1
40 % 1084 4272 1
30 % 1196 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.