Sequence Similarity Clusters for the Entities in PDB 2NY1

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48733
95 % 5 15 3489
90 % 5 15 3526
70 % 26 120 165
50 % 26 120 196
40 % 26 120 212
30 % 26 123 222
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 34 715
95 % 7 39 812
90 % 7 39 851
70 % 7 39 900
50 % 7 39 947
40 % 7 39 968
30 % 7 39 962
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 1205
95 % 5 23 1474
90 % 110 482 4
70 % 388 1583 3
50 % 974 3846 1
40 % 975 3847 1
30 % 1076 4574 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 1203
95 % 5 23 1470
90 % 5 23 1499
70 % 472 1866 1
50 % 975 3846 1
40 % 976 3847 1
30 % 1077 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.