Sequence Similarity Clusters for the Entities in PDB 2NY1

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49754
95 % 5 15 3563
90 % 5 15 3600
70 % 26 121 167
50 % 26 121 199
40 % 26 121 217
30 % 26 124 223
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 34 730
95 % 7 39 848
90 % 7 39 883
70 % 7 39 924
50 % 7 39 972
40 % 7 39 987
30 % 7 39 982
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 1241
95 % 5 23 1515
90 % 119 518 3
70 % 405 1639 3
50 % 1012 3985 1
40 % 1013 3986 1
30 % 1115 4715 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 1239
95 % 5 23 1511
90 % 5 23 1543
70 % 491 1932 1
50 % 1013 3985 1
40 % 1014 3986 1
30 % 1116 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.