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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, T257S, V275C, S334A, S375W, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY0
Sequence Clusters for the Sequence Entities in PDB 2NY0
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43097
95% 7 15 3010
90% 7 15 3050
70% 7 29 1075
50% 7 29 1140
40% 7 29 1161
30% 7 31 1061
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 30 835
95% 11 35 936
90% 11 35 956
70% 11 35 991
50% 11 35 1037
40% 11 35 1062
30% 11 35 1040
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 18 1495
95% 7 21 1655
90% 119 377 5
70% 462 1332 3
50% 1116 3170 1
40% 1117 3171 1
30% 1240 3753 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 18 1494
95% 7 21 1653
90% 7 21 1698
70% 541 1528 2
50% 1117 3170 1
40% 1118 3171 1
30% 1241 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.