Sequence Similarity Clusters for the Entities in PDB 2NY0

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53991
95 % 7 15 3911 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.5
PDBFlex
90 % 7 15 3946
70 % 43 126 179
50 % 43 126 219
40 % 43 126 240
30 % 43 129 246
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 38 685
95 % 11 43 824
90 % 11 43 852
70 % 11 43 888
50 % 11 43 929
40 % 11 43 952
30 % 11 43 927
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 21 1247
95 % 7 25 1367 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.7
PDBFlex
90 % 223 683 3
70 % 631 1841 2
50 % 1576 4537 1
40 % 1576 4537 1
30 % 1764 5342 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 21 1245
95 % 7 25 1365 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 7 25 1386
70 % 760 2197 1
50 % 1577 4537 1
40 % 1577 4537 1
30 % 1765 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.