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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, T257S, V275C, S334A, S375W, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY0
Sequence Clusters for the Sequence Entities in PDB 2NY0
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45461
95% 7 15 3240
90% 7 15 3278
70% 7 31 973
50% 7 31 1021
40% 7 31 1044
30% 7 33 979
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 33 683
95% 11 38 739
90% 11 38 780
70% 11 38 822
50% 11 38 893
40% 11 38 922
30% 11 38 915
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 20 1125
95% 7 23 1374
90% 134 431 4
70% 497 1445 3
50% 1213 3457 1
40% 1214 3458 1
30% 1341 4083 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 20 1123
95% 7 23 1369
90% 7 23 1393
70% 590 1672 1
50% 1214 3457 1
40% 1215 3458 1
30% 1342 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.