POP-OUT | CLOSE
 
HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, T257S, V275C, S334A, S375W, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY0
Sequence Clusters for the Sequence Entities in PDB 2NY0
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42062
95% 7 15 2918
90% 7 15 2961
70% 7 28 1051
50% 7 28 1138
40% 7 28 1159
30% 7 30 1080
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 29 816
95% 11 34 893
90% 11 34 915
70% 11 34 954
50% 11 34 1033
40% 11 34 1066
30% 11 34 1043
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 1518
95% 7 20 1669
90% 118 368 4
70% 454 1297 3
50% 1100 3090 1
40% 1101 3091 1
30% 1220 3653 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 17 1515
95% 7 20 1665
90% 7 20 1711
70% 533 1490 2
50% 1101 3090 1
40% 1102 3091 1
30% 1221 3653 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.