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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, T257S, V275C, S334A, S375W, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY0
Sequence Clusters for the Sequence Entities in PDB 2NY0
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44144
95% 7 15 3090
90% 7 15 3131
70% 7 29 1101
50% 7 29 1159
40% 7 29 1185
30% 7 31 1080
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 30 852
95% 11 35 965
90% 11 35 985
70% 11 35 1015
50% 11 35 1057
40% 11 35 1085
30% 11 35 1061
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 18 1540
95% 7 21 1691
90% 124 389 5
70% 471 1366 3
50% 1140 3252 1
40% 1141 3253 1
30% 1266 3839 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 18 1539
95% 7 21 1689
90% 7 21 1737
70% 553 1569 2
50% 1141 3252 1
40% 1142 3253 1
30% 1267 3839 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.