Sequence Similarity Clusters for the Entities in PDB 2NY0

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51568
95 % 7 15 3755
90 % 7 15 3789
70 % 42 125 171
50 % 42 125 206
40 % 42 125 230
30 % 42 128 232
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 35 708
95 % 11 40 843
90 % 11 40 878
70 % 11 40 911
50 % 11 40 951
40 % 11 40 974
30 % 11 40 957
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 21 1146
95 % 7 24 1426
90 % 205 624 3
70 % 597 1729 2
50 % 1479 4220 1
40 % 1479 4221 1
30 % 1642 4972 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 21 1144
95 % 7 24 1424
90 % 7 24 1450
70 % 713 2041 1
50 % 1480 4220 1
40 % 1480 4221 1
30 % 1643 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.