Sequence Similarity Clusters for the Entities in PDB 2NY0

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53058
95 % 7 15 3845
90 % 7 15 3878
70 % 43 126 179
50 % 43 126 216
40 % 43 126 238
30 % 43 129 242
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 37 712
95 % 11 42 844
90 % 11 42 879
70 % 11 42 911
50 % 11 42 962
40 % 11 42 982
30 % 11 42 959
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 21 1202
95 % 7 24 1475
90 % 210 651 3
70 % 614 1790 2
50 % 1535 4403 1
40 % 1535 4403 1
30 % 1719 5191 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 21 1200
95 % 7 24 1473
90 % 7 24 1497
70 % 740 2129 1
50 % 1536 4403 1
40 % 1536 4403 1
30 % 1720 5191 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.