Sequence Similarity Clusters for the Entities in PDB 2NXZ

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 21552
95 % 6 15 4419 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.5
PDBFlex
90 % 6 15 4465
70 % 30 185 132
50 % 30 185 159
40 % 30 185 171
30 % 30 188 189
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 38 888
95 % 8 43 914 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 8 43 947
70 % 8 43 974
50 % 8 43 1027
40 % 8 43 1039
30 % 8 43 1025
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 21 1586
95 % 9 34 1118 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.2
PDBFlex
90 % 235 811 2
70 % 724 2621 1
50 % 1491 5323 1
40 % 1742 6003 1
30 % 2121 7460 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 1282
95 % 6 25 1507 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 6 25 1531
70 % 718 2580 2
50 % 1492 5323 1
40 % 1743 6003 1
30 % 2122 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4H8W 4 C T-cell surface glycoprotein CD4 9606
2 2NXY 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
3 2NY2 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
4 1CDY 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606
5 2NY4 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
6 2NY3 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
7 2NY1 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
8 2NXZ 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
9 3O2D 3 A T-cell surface glycoprotein CD4 UNP residues 26-207 9606
10 3CD4 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
11 2NY0 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
12 3S5L 4 G, H T-cell surface glycoprotein CD4 CD4 9606
13 1CDH 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
14 1CDU 1 A T-CELL SURFACE GLYCOPROTEIN CD4 D1D2 FRAGMENT 9606
15 1CDJ 1 A T-CELL SURFACE GLYCOPROTEIN CD4 WILD TYPE, 110K FORM D1D2 FRAGMENT 9606
16 2NY5 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
17 1RZJ 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
18 1GC1 2 C CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
19 1G9M 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
20 3JWD 2 C, D T-cell surface glycoprotein CD4 9606
21 3S4S 4 G, H T-cell surface glycoprotein CD4 UNP residues 26-203 9606
22 1CDI 1 A T CELL SURFACE GLYCOPROTEIN CD4 9606
23 2NY6 2 B T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
24 1RZK 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
25 1G9N 2 C T-CELL SURFACE GLYCOPROTEIN CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
26 2QAD 2 B, F T-cell surface glycoprotein CD4 D1D2, IG-LIKE V-TYPE AND IG-LIKE C2-TYPE 1 DOMAINS 9606
27 5CAY 2 B T-cell surface glycoprotein CD4 domains 1 and 2 (UNP residues 26-208) 9606
28 4P9H 1 C T-cell surface glycoprotein CD4 CD4 D1D2 9606
29 4R2G 2 B, F, H, L T-cell surface glycoprotein CD4 9606
30 4JM2 6 F T-cell surface glycoprotein CD4 Ig-like V-type and C2-type 1 domains (UNP residues 26-208) 9606
31 3LQA 1 C T-cell surface glycoprotein CD4 9606
32 3JWO 2 C T-cell surface glycoprotein CD4 9606
33 2B4C 2 C T-cell surface glycoprotein CD4 D1D2, N-TERMINAL TWO DOMAIN FRAGMENT 9606
34 4RQS 1 B 2-domain CD4 9606
35 4R4H 2 B T-cell surface glycoprotein CD4 UNP residues 26-203 9606
36 1JL4 4 D T-CELL SURFACE GLYCOPROTEIN CD4 9606
37 5VN3 4 C, E, F T-cell surface glycoprotein CD4 9606
38 5THR 3 G, H, I T-cell surface glycoprotein CD4 UNP residues 26-207 9606
39 3JCB 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
40 3JCC 4 D T-cell surface glycoprotein CD4 UNP residues 26-200 9606
41 5A8H 2 B, H, N T-CELL SURFACE GLYCOPROTEIN CD4 SOLUBLE CD4 D1-D2 DOMAINS, RESIDUES26-208 9606
42 5A7X 2 B, F, J T-CELL SURFACE GLYCOPROTEIN CD4 9606
43 3J70 3 C, O, T T-cell surface glycoprotein CD4 UNP residues 26-208 9606