Sequence Similarity Clusters for the Entities in PDB 2NXZ

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 22441
95 % 6 15 4646 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.8
PDBFlex
90 % 6 15 4673
70 % 30 207 126
50 % 30 207 147
40 % 30 207 161
30 % 30 210 175
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 40 873
95 % 8 46 828 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 8 46 858
70 % 8 46 907
50 % 8 46 951
40 % 8 46 982
30 % 8 46 960
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 22 1523
95 % 8 34 1140 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.2
PDBFlex
90 % 248 862 2
70 % 750 2758 1
50 % 1554 5611 1
40 % 1816 6368 1
30 % 2211 7920 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 26 1242
95 % 6 26 1485 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 6 26 1505
70 % 748 2721 2
50 % 1555 5611 1
40 % 1817 6368 1
30 % 2212 7920 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2NY2 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676
2 2NY4 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676
3 2NY3 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676
4 2NXZ 1 A ENVELOPE GLYCOPROTEIN GP120 CORE 11676