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HIV-1 gp120 Envelope Glycoprotein (T257S, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXZ
Sequence Clusters for the Sequence Entities in PDB 2NXZ
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41637
95% 6 15 2825
90% 6 15 2873
70% 6 27 1155
50% 6 27 1218
40% 6 27 1253
30% 6 29 1153
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 28 921
95% 8 33 979
90% 8 33 1003
70% 8 33 1034
50% 8 33 1102
40% 8 33 1131
30% 8 33 1120
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 1434
95% 6 20 1583
90% 89 365 4
70% 342 1291 3
50% 842 3070 1
40% 843 3071 1
30% 921 3629 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 1431
95% 6 20 1579
90% 6 20 1627
70% 408 1480 2
50% 843 3070 1
40% 844 3071 1
30% 922 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.