Sequence Similarity Clusters for the Entities in PDB 2NXZ

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54793
95 % 6 15 3973
90 % 6 15 4010
70 % 30 126 178
50 % 30 126 221
40 % 30 126 240
30 % 30 129 248
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 699
95 % 8 43 833
90 % 8 43 863
70 % 8 43 895
50 % 8 43 941
40 % 8 43 968
30 % 8 43 940
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 21 1264
95 % 8 32 1110
90 % 176 697 3
70 % 618 2280 1
50 % 1268 4619 1
40 % 1268 4619 1
30 % 1410 5440 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 21 1262
95 % 6 25 1390
90 % 6 25 1413
70 % 611 2238 2
50 % 1269 4619 1
40 % 1269 4619 1
30 % 1411 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.