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HIV-1 gp120 Envelope Glycoprotein (T257S, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXZ
Sequence Clusters for the Sequence Entities in PDB 2NXZ
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43096
95% 6 15 3010
90% 6 15 3050
70% 6 29 1075
50% 6 29 1140
40% 6 29 1161
30% 6 31 1061
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 30 835
95% 8 35 936
90% 8 35 956
70% 8 35 991
50% 8 35 1037
40% 8 35 1062
30% 8 35 1040
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 18 1495
95% 6 21 1655
90% 92 377 5
70% 353 1332 3
50% 864 3170 1
40% 865 3171 1
30% 949 3753 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 18 1494
95% 6 21 1653
90% 6 21 1698
70% 419 1528 2
50% 865 3170 1
40% 866 3171 1
30% 950 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.