Sequence Similarity Clusters for the Entities in PDB 2NXZ

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47318
95 % 6 15 3380
90 % 6 15 3417
70 % 6 31 1010
50 % 6 31 1058
40 % 6 31 1081
30 % 27 111 242
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 34 680
95 % 8 39 757
90 % 8 39 796
70 % 8 39 843
50 % 8 39 908
40 % 8 39 931
30 % 8 39 925
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 20 1177
95 % 6 23 1436
90 % 111 461 4
70 % 405 1519 3
50 % 1008 3677 1
40 % 1009 3678 1
30 % 1107 4338 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 20 1175
95 % 6 23 1431
90 % 6 23 1456
70 % 489 1782 1
50 % 1009 3677 1
40 % 1010 3678 1
30 % 1108 4338 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.