Sequence Similarity Clusters for the Entities in PDB 2NXZ

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70665
95 % 6 15 4462
90 % 6 15 4517
70 % 6 31 1408
50 % 6 32 1423
40 % 6 32 1464
30 % 6 34 1433
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 39 750
95 % 8 46 818
90 % 8 46 859
70 % 8 46 913
50 % 8 46 958
40 % 8 46 1003
30 % 8 46 1043
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 22 1351
95 % 6 26 1517
90 % 199 704 2
70 % 609 2236 2
50 % 775 2821 2
40 % 775 2821 2
30 % 1588 5715 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 22 1368
95 % 6 26 1515
90 % 6 26 1544
70 % 755 2735 1
50 % 801 2852 1
40 % 801 2852 1
30 % 1589 5715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures