Sequence Similarity Clusters for the Entities in PDB 2NXZ

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49088
95 % 6 15 3523
90 % 6 15 3560
70 % 29 120 166
50 % 29 120 198
40 % 29 120 214
30 % 29 123 222
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 34 725
95 % 8 39 832
90 % 8 39 866
70 % 8 39 907
50 % 8 39 952
40 % 8 39 974
30 % 8 39 969
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 20 1215
95 % 6 23 1486
90 % 123 502 3
70 % 433 1611 3
50 % 1075 3908 1
40 % 1076 3909 1
30 % 1187 4637 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 20 1213
95 % 6 23 1482
90 % 6 23 1513
70 % 522 1896 1
50 % 1076 3908 1
40 % 1077 3909 1
30 % 1188 4637 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.