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HIV-1 gp120 Envelope Glycoprotein (T257S, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXZ
Sequence Clusters for the Sequence Entities in PDB 2NXZ
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42445
95% 6 15 2949
90% 6 15 2989
70% 6 28 1083
50% 6 28 1150
40% 6 28 1171
30% 6 30 1091
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 29 851
95% 8 34 952
90% 8 34 971
70% 8 34 999
50% 8 34 1047
40% 8 34 1077
30% 8 34 1054
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 1538
95% 6 20 1684
90% 92 370 5
70% 347 1303 3
50% 852 3106 1
40% 853 3107 1
30% 935 3679 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 1534
95% 6 20 1680
90% 6 20 1727
70% 413 1498 2
50% 853 3106 1
40% 854 3107 1
30% 936 3679 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.