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HIV-1 gp120 Envelope Glycoprotein (T257S, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXZ
Sequence Clusters for the Sequence Entities in PDB 2NXZ
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41560
95% 6 15 2824
90% 6 15 2872
70% 6 27 1155
50% 6 27 1218
40% 6 27 1252
30% 6 29 1152
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 27 956
95% 8 32 1029
90% 8 32 1051
70% 8 32 1082
50% 8 32 1146
40% 8 32 1179
30% 8 32 1165
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 1433
95% 6 20 1582
90% 89 362 4
70% 341 1286 3
50% 838 3058 1
40% 839 3059 1
30% 917 3617 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 17 1430
95% 6 20 1578
90% 6 20 1626
70% 406 1474 2
50% 839 3058 1
40% 840 3059 1
30% 918 3617 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.