Sequence Similarity Clusters for the Entities in PDB 2NXZ

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52828
95 % 6 15 3824
90 % 6 15 3859
70 % 30 126 179
50 % 30 126 216
40 % 30 126 238
30 % 30 129 241
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 35 744
95 % 8 40 897
90 % 8 40 928
70 % 8 40 954
50 % 8 40 988
40 % 8 40 1006
30 % 8 40 981
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 21 1195
95 % 6 24 1473
90 % 163 644 3
70 % 481 1775 2
50 % 1216 4367 1
40 % 1216 4367 1
30 % 1348 5151 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 21 1193
95 % 6 24 1471
90 % 6 24 1494
70 % 585 2111 1
50 % 1217 4367 1
40 % 1217 4367 1
30 % 1349 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.