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HIV-1 gp120 Envelope Glycoprotein (T257S, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXZ
Sequence Clusters for the Sequence Entities in PDB 2NXZ
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44083
95% 6 15 3088
90% 6 15 3128
70% 6 29 1100
50% 6 29 1159
40% 6 29 1184
30% 6 31 1078
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 30 852
95% 8 35 965
90% 8 35 985
70% 8 35 1015
50% 8 35 1057
40% 8 35 1084
30% 8 35 1060
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 18 1539
95% 6 21 1691
90% 97 389 5
70% 360 1361 3
50% 884 3242 1
40% 885 3243 1
30% 969 3827 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 18 1538
95% 6 21 1689
90% 6 21 1737
70% 429 1564 2
50% 885 3242 1
40% 886 3243 1
30% 970 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.