Sequence Similarity Clusters for the Entities in PDB 2NXY

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51048
95 % 1 15 3695
90 % 1 15 3733
70 % 18 125 168
50 % 18 125 201
40 % 18 125 221
30 % 18 128 228
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 35 695
95 % 2 40 830
90 % 2 40 863
70 % 2 40 901
50 % 2 40 943
40 % 2 40 963
30 % 2 40 950
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 1129
95 % 1 24 1409
90 % 113 618 3
70 % 331 1710 2
50 % 811 4166 1
40 % 811 4167 1
30 % 880 4915 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 1127
95 % 1 24 1407
90 % 1 24 1433
70 % 395 2016 1
50 % 812 4166 1
40 % 812 4167 1
30 % 881 4915 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.