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HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44689
95% 1 15 3127
90% 1 15 3167
70% 1 29 1112
50% 1 29 1172
40% 1 29 1197
30% 1 31 1093
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 30 865
95% 2 35 982
90% 2 35 1003
70% 2 35 1034
50% 2 35 1076
40% 2 35 1096
30% 2 35 1073
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1555
95% 1 21 1716
90% 67 414 4
70% 257 1404 3
50% 625 3339 1
40% 625 3340 1
30% 683 3953 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1553
95% 1 21 1714
90% 1 21 1761
70% 305 1614 2
50% 626 3339 1
40% 626 3340 1
30% 684 3953 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.