POP-OUT | CLOSE

An Information Portal to 108263 Biological Macromolecular Structures

HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44082
95% 1 15 3088
90% 1 15 3128
70% 1 29 1100
50% 1 29 1159
40% 1 29 1184
30% 1 31 1078
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 30 852
95% 2 35 965
90% 2 35 985
70% 2 35 1015
50% 2 35 1057
40% 2 35 1084
30% 2 35 1060
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1539
95% 1 21 1691
90% 66 389 5
70% 248 1361 3
50% 602 3242 1
40% 602 3243 1
30% 656 3827 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1538
95% 1 21 1689
90% 1 21 1737
70% 295 1564 2
50% 603 3242 1
40% 603 3243 1
30% 657 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.