Sequence Similarity Clusters for the Entities in PDB 2NXY

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52382
95 % 1 15 3798
90 % 1 15 3831
70 % 18 126 174
50 % 18 126 213
40 % 18 126 235
30 % 18 129 238
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 35 738
95 % 2 40 889
90 % 2 40 921
70 % 2 40 946
50 % 2 40 979
40 % 2 40 998
30 % 2 40 977
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 1183
95 % 1 24 1461
90 % 115 640 3
70 % 339 1765 2
50 % 836 4337 1
40 % 836 4337 1
30 % 912 5109 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 1181
95 % 1 24 1458
90 % 1 24 1483
70 % 407 2096 1
50 % 837 4337 1
40 % 837 4337 1
30 % 913 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.