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HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42675
95% 1 15 2968
90% 1 15 3006
70% 1 28 1097
50% 1 28 1168
40% 1 28 1186
30% 1 30 1108
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 29 856
95% 2 34 961
90% 2 34 979
70% 2 34 1007
50% 2 34 1057
40% 2 34 1086
30% 2 34 1063
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 1547
95% 1 20 1695
90% 63 374 5
70% 239 1317 3
50% 578 3136 1
40% 578 3137 1
30% 632 3713 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 1543
95% 1 20 1691
90% 1 20 1737
70% 283 1511 2
50% 579 3136 1
40% 579 3137 1
30% 633 3713 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.