Sequence Similarity Clusters for the Entities in PDB 2NXY

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52827
95 % 1 15 3824
90 % 1 15 3859
70 % 18 126 179
50 % 18 126 216
40 % 18 126 238
30 % 18 129 241
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 35 744
95 % 2 40 897
90 % 2 40 928
70 % 2 40 954
50 % 2 40 988
40 % 2 40 1006
30 % 2 40 981
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 1195
95 % 1 24 1473
90 % 117 644 3
70 % 341 1775 2
50 % 840 4367 1
40 % 840 4367 1
30 % 919 5151 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 1193
95 % 1 24 1471
90 % 1 24 1494
70 % 409 2111 1
50 % 841 4367 1
40 % 841 4367 1
30 % 920 5151 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.