POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44372
95% 1 15 3107
90% 1 15 3146
70% 1 29 1108
50% 1 29 1165
40% 1 29 1191
30% 1 31 1087
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 30 862
95% 2 35 977
90% 2 35 997
70% 2 35 1025
50% 2 35 1064
40% 2 35 1090
30% 2 35 1067
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1546
95% 1 21 1703
90% 67 413 4
70% 252 1388 3
50% 609 3295 1
40% 609 3296 1
30% 665 3893 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1545
95% 1 21 1701
90% 1 21 1748
70% 298 1590 2
50% 610 3295 1
40% 610 3296 1
30% 666 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.