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HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41719
95% 1 15 2835
90% 1 15 2883
70% 1 27 1155
50% 1 27 1219
40% 1 27 1254
30% 1 29 1154
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 28 923
95% 2 33 980
90% 2 33 1004
70% 2 33 1036
50% 2 33 1104
40% 2 33 1131
30% 2 33 1120
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 1437
95% 1 20 1586
90% 60 366 4
70% 233 1292 3
50% 566 3072 1
40% 566 3073 1
30% 618 3633 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 17 1434
95% 1 20 1582
90% 1 20 1630
70% 277 1481 2
50% 567 3072 1
40% 567 3073 1
30% 619 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.