Sequence Similarity Clusters for the Entities in PDB 2NXY

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47388
95 % 1 15 3385
90 % 1 15 3424
70 % 1 31 1013
50 % 1 31 1063
40 % 1 31 1088
30 % 17 111 242
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 34 685
95 % 2 39 759
90 % 2 39 798
70 % 2 39 845
50 % 2 39 909
40 % 2 39 933
30 % 2 39 927
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1178
95 % 1 23 1437
90 % 78 461 4
70 % 283 1526 3
50 % 696 3692 1
40 % 696 3693 1
30 % 762 4355 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1176
95 % 1 23 1432
90 % 1 23 1458
70 % 339 1790 1
50 % 697 3692 1
40 % 697 3693 1
30 % 763 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.