POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45105
95% 1 15 3166
90% 1 15 3203
70% 1 29 1119
50% 1 29 1187
40% 1 29 1214
30% 1 31 1105
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 30 876
95% 2 35 993
90% 2 35 1014
70% 2 35 1043
50% 2 35 1088
40% 2 35 1112
30% 2 35 1085
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1570
95% 1 21 1744
90% 68 425 4
70% 265 1434 3
50% 645 3425 1
40% 645 3426 1
30% 703 4043 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1568
95% 1 21 1741
90% 1 21 1786
70% 315 1656 1
50% 646 3425 1
40% 646 3426 1
30% 704 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.