Sequence Similarity Clusters for the Entities in PDB 2NXY

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48421
95 % 1 15 3469
90 % 1 15 3506
70 % 18 120 165
50 % 18 120 196
40 % 18 120 211
30 % 18 123 222
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 34 702
95 % 2 39 783
90 % 2 39 819
70 % 2 39 865
50 % 2 39 930
40 % 2 39 956
30 % 2 39 951
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1198
95 % 1 23 1467
90 % 82 476 4
70 % 295 1568 3
50 % 728 3813 1
40 % 728 3814 1
30 % 795 4537 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 1196
95 % 1 23 1463
90 % 1 23 1492
70 % 355 1850 1
50 % 729 3813 1
40 % 729 3814 1
30 % 796 4537 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.