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HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45459
95% 1 15 3240
90% 1 15 3278
70% 1 31 973
50% 1 31 1021
40% 1 31 1044
30% 1 33 979
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 33 683
95% 2 38 739
90% 2 38 780
70% 2 38 822
50% 2 38 893
40% 2 38 922
30% 2 38 915
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 20 1125
95% 1 23 1374
90% 69 431 4
70% 266 1445 3
50% 649 3457 1
40% 649 3458 1
30% 707 4083 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 20 1123
95% 1 23 1369
90% 1 23 1393
70% 317 1672 1
50% 650 3457 1
40% 650 3458 1
30% 708 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.