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HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NXY
Sequence Clusters for the Sequence Entities in PDB 2NXY
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44452
95% 1 15 3113
90% 1 15 3153
70% 1 29 1109
50% 1 29 1168
40% 1 29 1193
30% 1 31 1090
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 30 863
95% 2 35 978
90% 2 35 998
70% 2 35 1026
50% 2 35 1066
40% 2 35 1092
30% 2 35 1070
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1549
95% 1 21 1704
90% 67 413 4
70% 254 1391 3
50% 617 3311 1
40% 617 3312 1
30% 673 3921 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 1548
95% 1 21 1702
90% 1 21 1749
70% 300 1595 2
50% 618 3311 1
40% 618 3312 1
30% 674 3921 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.