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New Pharmacophore for Serine Protease Inhibition Revealed by Crystal Structure of Human Urokinase-type Plasminogen Activator Complexed with a Cyclic Peptidyl Inhibitor, upain-1
Sequence Clustering and Redundancy Reduction Results
2NWN
Sequence Clusters for the Sequence Entities in PDB 2NWN
Entity #1: Chains: A - Plasminogen activator, urokinase protein, length: 253 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 40 720
95% 80 100 272
90% 80 100 285
70% 80 100 304
50% 80 100 331
40% 82 110 322
30% 1253 1634 6
Entity #2: Chains: B - upain-1 protein, length: 12 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.