Sequence Similarity Clusters for the Entities in PDB 2NUG

Entity #1 | Chains: C,D
5'-R(P*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*G)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,F
5'-R(P*AP*GP*UP*GP*GP*CP*CP*UP*UP*GP*C)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Ribonuclease III protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2760
95 % 1 11 2989 Flexibility: Medium
Max RMSD: 14.3, Avg RMSD: 8.6
PDBFlex
90 % 1 11 3047
70 % 1 11 3015
50 % 1 11 2933
40 % 1 11 2848
30 % 1 14 2190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures