Sequence Similarity Clusters for the Entities in PDB 2NUG

Entity #1 | Chains: C,D
5'-R(P*AP*AP*GP*GP*UP*CP*AP*UP*UP*CP*G)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E,F
5'-R(P*AP*GP*UP*GP*GP*CP*CP*UP*UP*GP*C)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Ribonuclease III protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 2521
95 % 1 11 2844 Flexibility: Medium
Max RMSD: 14.3, Avg RMSD: 8.6
PDBFlex
90 % 1 11 2905
70 % 1 11 2866
50 % 1 11 2804
40 % 1 11 2726
30 % 1 14 2101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures