Sequence Similarity Clusters for the Entities in PDB 2NOV

Entity #1 | Chains: A,B,C,D
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 1847
95 % 4 14 2159 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.4
PDBFlex
90 % 4 14 2214
70 % 4 14 2222
50 % 25 49 494
40 % 26 50 547
30 % 26 50 550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3K9F 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
2 3RAE 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
3 4KOE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
4 2NOV 1 A, B, C, D DNA topoisomerase 4 subunit A 55-kDa N-terminal fragment 1313 5.99.1 | Details
5 4KPF 1 A, B ParC55 ParC55 1313 5.99.1.3 | Details
6 3RAF 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
7 4KPE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
8 3LTN 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
9 3KSA 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
10 3RAD 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
11 3KSB 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
12 3FOF 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
13 3FOE 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
14 4JUO 1 A DNA topoisomerase 4 subunit A ParC55 1313 5.99.1.3 | Details