Sequence Similarity Clusters for the Entities in PDB 2NOV

Entity #1 | Chains: A,B,C,D
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 1496
95 % 4 14 2008 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.3
PDBFlex
90 % 4 14 2056
70 % 4 14 2066
50 % 24 45 518
40 % 25 46 557
30 % 25 46 551

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3ILW 1 A, B DNA gyrase subunit A N-terminal domain 1773 5.99.1.3 | Details
2 4CKK 1 A, B, C, D DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.99.1.3 | Details
3 5IWI 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
4 4CKL 1 A, B DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.99.1.3 | Details
5 5CDM 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
6 5CDP 1 A, C DNA gyrase subunit A UNP residues 9-491 1280 5.99.1.3 | Details
7 5BS8 1 A, C DNA gyrase subunit A GyrA tower and C-gate domains 1773 5.99.1.3 | Details
8 5IWM 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
9 5CDR 1 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
10 5BTD 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
11 5BTI 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
12 2Y3P 1 A, B DNA GYRASE SUBUNIT A COMPRISES RESIDUES 2-523 OF WILD TYPE SEQUENCE N-TERMINAL 59KDA DOMAIN, RESIDUES 2-523 562 5.99.1.3 | Details
13 3IFZ 1 A, B DNA gyrase subunit A Breakage and reunion domain (N-terminal domain) 1773 5.99.1.3 | Details
14 5BTN 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
15 5BTG 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
16 5BTL 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
17 5BTA 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
18 5BTC 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
19 5CDQ 1 A, C, R, T DNA gyrase subunit A UNP residues 10-490 1280 5.99.1.3 | Details
20 3K9F 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
21 3RAE 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
22 4KOE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
23 5BTF 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
24 2NOV 1 A, B, C, D DNA topoisomerase 4 subunit A 55-kDa N-terminal fragment 1313 5.99.1 | Details
25 4KPF 1 A, B ParC55 ParC55 1313 5.99.1.3 | Details
26 5CDN 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
27 3RAF 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
28 4KPE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
29 3LTN 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
30 1AB4 1 A GYRASE A 59KDA FRAGMENT 562 5.99.1.3 | Details
31 4DDQ 1 A, B, C, D, E, F DNA gyrase subunit A 1423 5.99.1.3 | Details
32 3LPX 1 A, B DNA gyrase, A subunit N-terminal fragment 28229 5.99.1.3 | Details
33 3KSA 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
34 2INR 1 A DNA topoisomerase 4 subunit A 59 kDa fragment of GrlA 1280 5.99.1 | Details
35 3RAD 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
36 5CDO 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
37 3KSB 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
38 4Z2C 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
39 3NUH 1 A DNA gyrase subunit A unp residues 1-525 562 5.99.1.3 | Details
40 4Z2D 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
41 4TMA 1 A, C, E, G DNA gyrase subunit A UNP residues 1-525 562 5.99.1.3 | Details
42 4Z2E 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
43 3FOF 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
44 3FOE 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
45 4JUO 1 A DNA topoisomerase 4 subunit A ParC55 1313 5.99.1.3 | Details