Sequence Similarity Clusters for the Entities in PDB 2NOV

Entity #1 | Chains: A,B,C,D
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 1819
95 % 4 14 2141 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.4
PDBFlex
90 % 4 14 2194
70 % 4 14 2207
50 % 25 49 489
40 % 26 50 542
30 % 26 50 547

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3ILW 1 A, B DNA gyrase subunit A N-terminal domain 1773 5.99.1.3 | Details
2 4CKK 1 A, B, C, D DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.99.1.3 | Details
3 5IWI 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
4 4CKL 1 A, B DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.99.1.3 | Details
5 5CDM 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
6 5CDP 1 A, C DNA gyrase subunit A UNP residues 9-491 1280 5.99.1.3 | Details
7 5BS8 1 A, C DNA gyrase subunit A GyrA tower and C-gate domains 1773 5.99.1.3 | Details
8 5IWM 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
9 5CDR 1 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
10 5BTD 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
11 5BTI 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
12 6FQV 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
13 2Y3P 1 A, B DNA GYRASE SUBUNIT A COMPRISES RESIDUES 2-523 OF WILD TYPE SEQUENCE N-TERMINAL 59KDA DOMAIN, RESIDUES 2-523 562 5.99.1.3 | Details
14 3IFZ 1 A, B DNA gyrase subunit A Breakage and reunion domain (N-terminal domain) 1773 5.99.1.3 | Details
15 5BTN 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
16 5BTG 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
17 5BTL 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
18 5BTA 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
19 5BTC 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
20 5CDQ 1 A, C, R, T DNA gyrase subunit A UNP residues 10-490 1280 5.99.1.3 | Details
21 3K9F 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
22 3RAE 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
23 4KOE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
24 5BTF 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
25 2NOV 1 A, B, C, D DNA topoisomerase 4 subunit A 55-kDa N-terminal fragment 1313 5.99.1 | Details
26 4KPF 1 A, B ParC55 ParC55 1313 5.99.1.3 | Details
27 5CDN 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
28 6FQS 2 A DNA gyrase subunit A 1280 5.99.1.3 | Details
29 6FQS 3 C DNA gyrase subunit A 1280 5.99.1.3 | Details
30 3RAF 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
31 4KPE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
32 3LTN 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
33 1AB4 1 A GYRASE A 59KDA FRAGMENT 562 5.99.1.3 | Details
34 6FQM 2 A, C, a, c DNA gyrase subunit A 1280 5.99.1.3 | Details
35 4DDQ 1 A, B, C, D, E, F DNA gyrase subunit A 1423 5.99.1.3 | Details
36 3LPX 1 A, B DNA gyrase, A subunit N-terminal fragment 28229 5.99.1.3 | Details
37 3KSA 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
38 2INR 1 A DNA topoisomerase 4 subunit A 59 kDa fragment of GrlA 1280 5.99.1 | Details
39 3RAD 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
40 5CDO 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
41 3KSB 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
42 4Z2C 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
43 3NUH 1 A DNA gyrase subunit A unp residues 1-525 562 5.99.1.3 | Details
44 4Z2D 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
45 4TMA 1 A, C, E, G DNA gyrase subunit A UNP residues 1-525 562 5.99.1.3 | Details
46 4Z2E 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
47 3FOF 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
48 3FOE 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
49 4JUO 1 A DNA topoisomerase 4 subunit A ParC55 1313 5.99.1.3 | Details