Sequence Similarity Clusters for the Entities in PDB 2NOV

Entity #1 | Chains: A,B,C,D
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 1744
95 % 4 14 2053 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.3
PDBFlex
90 % 4 14 2105
70 % 4 14 2112
50 % 25 49 477
40 % 26 50 527
30 % 26 50 532

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3ILW 1 A, B DNA gyrase subunit A N-terminal domain 1773 5.99.1.3 | Details
2 4CKK 1 A, B, C, D DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.99.1.3 | Details
3 5IWI 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
4 4CKL 1 A, B DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.99.1.3 | Details
5 5CDM 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
6 5CDP 1 A, C DNA gyrase subunit A UNP residues 9-491 1280 5.99.1.3 | Details
7 5BS8 1 A, C DNA gyrase subunit A GyrA tower and C-gate domains 1773 5.99.1.3 | Details
8 5IWM 2 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
9 5CDR 1 A, C DNA gyrase subunit A 1280 5.99.1.3 | Details
10 5BTD 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
11 5BTI 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
12 6FQV 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
13 6BQ9 1 A DNA topoisomerase 4 subunit A N-terminal Fragment 303 5.99.1.3 | Details
14 2Y3P 1 A, B DNA GYRASE SUBUNIT A COMPRISES RESIDUES 2-523 OF WILD TYPE SEQUENCE N-TERMINAL 59KDA DOMAIN, RESIDUES 2-523 562 5.99.1.3 | Details
15 3IFZ 1 A, B DNA gyrase subunit A Breakage and reunion domain (N-terminal domain) 1773 5.99.1.3 | Details
16 5BTN 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
17 5BTG 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
18 5BTL 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
19 5BTA 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
20 5BTC 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
21 5CDQ 1 A, C, R, T DNA gyrase subunit A UNP residues 10-490 1280 5.99.1.3 | Details
22 3K9F 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
23 3RAE 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
24 4KOE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
25 5BTF 1 A, C DNA gyrase subunit A GyrA 2-500 with IGSG C-terminal tag 1773 5.99.1.3 | Details
26 2NOV 1 A, B, C, D DNA topoisomerase 4 subunit A 55-kDa N-terminal fragment 1313 5.99.1 | Details
27 4KPF 1 A, B ParC55 ParC55 1313 5.99.1.3 | Details
28 5CDN 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
29 6FQS 2 A DNA gyrase subunit A 1280 5.99.1.3 | Details
30 6FQS 3 C DNA gyrase subunit A 1280 5.99.1.3 | Details
31 3RAF 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
32 4KPE 1 A, B DNA topoisomerase 4 subunit A ParC55, UNP residues 1-488 1313 5.99.1.3 | Details
33 3LTN 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
34 1AB4 1 A GYRASE A 59KDA FRAGMENT 562 5.99.1.3 | Details
35 6FQM 2 A, C, a, c DNA gyrase subunit A 1280 5.99.1.3 | Details
36 4DDQ 1 A, B, C, D, E, F DNA gyrase subunit A 1423 5.99.1.3 | Details
37 3LPX 1 A, B DNA gyrase, A subunit N-terminal fragment 28229 5.99.1.3 | Details
38 3KSA 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
39 2INR 1 A DNA topoisomerase 4 subunit A 59 kDa fragment of GrlA 1280 5.99.1 | Details
40 3RAD 1 A, B DNA topoisomerase 4 subunit A UNP residues 1-488 1313 5.99.1.3 | Details
41 5CDO 1 A, C, R, T DNA gyrase subunit A 1280 5.99.1.3 | Details
42 3KSB 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
43 4Z2C 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
44 3NUH 1 A DNA gyrase subunit A unp residues 1-525 562 5.99.1.3 | Details
45 4Z2D 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
46 4TMA 1 A, C, E, G DNA gyrase subunit A UNP residues 1-525 562 5.99.1.3 | Details
47 4Z2E 1 A, B DNA gyrase subunit A 1313 5.99.1.3 | Details
48 3FOF 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
49 3FOE 1 A, B DNA topoisomerase 4 subunit A residues 1-488 1313 5.99.1.3 | Details
50 4JUO 1 A DNA topoisomerase 4 subunit A ParC55 1313 5.99.1.3 | Details