Sequence Similarity Clusters for the Entities in PDB 2NL8

Entity #1 | Chains: W
18-nt PEN element of the SV40 DNA origin dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
large T antigen protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63962
95 % 8 14 2848 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 8 14 2896
70 % 11 18 2243
50 % 11 18 2223
40 % 11 18 2218
30 % 11 18 2118

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.