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The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)
Sequence Clustering and Redundancy Reduction Results
2NL8
Sequence Clusters for the Sequence Entities in PDB 2NL8
Entity #1: Chains: W - 18-nt PEN element of the SV40 DNA origin dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A - large T antigen protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50629
95% 7 13 2339
90% 7 13 2373
70% 10 16 1929
50% 10 16 1979
40% 10 16 2004
30% 10 16 1904
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.