POP-OUT | CLOSE

An Information Portal to 106858 Biological Macromolecular Structures

The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)
Sequence Clustering and Redundancy Reduction Results
2NL8
Sequence Clusters for the Sequence Entities in PDB 2NL8
Entity #1: Chains: W - 18-nt PEN element of the SV40 DNA origin dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A - large T antigen protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52269
95% 7 13 2513
90% 7 13 2543
70% 10 16 2052
50% 10 16 2071
40% 10 16 2088
30% 10 16 1966
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.