Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 11578
95 % 5 8 6750
90 % 5 8 6736
70 % 5 8 6538
50 % 5 8 6093
40 % 5 8 5664
30 % 5 8 4984
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22537
95 % 58 58 460
90 % 91 91 270
70 % 2539 2553 1
50 % 5156 5180 1
40 % 5797 5834 1
30 % 7173 7269 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17517
95 % 3 3 14373
90 % 16 16 2334
70 % 2503 2511 2
50 % 5157 5180 1
40 % 5798 5834 1
30 % 7174 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures