Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21897
95 % 5 8 6367
90 % 5 8 6352
70 % 5 8 6206
50 % 5 8 5800
40 % 5 8 5432
30 % 5 8 4872
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20451
95 % 62 62 383
90 % 83 83 301
70 % 2273 2287 1
50 % 4609 4633 1
40 % 4609 4633 1
30 % 5432 5461 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20873
95 % 2 2 18209
90 % 15 15 2372
70 % 2236 2244 2
50 % 4610 4633 1
40 % 4610 4633 1
30 % 5433 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.