Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21560
95 % 5 8 6292
90 % 5 8 6277
70 % 5 8 6119
50 % 5 8 5720
40 % 5 8 5354
30 % 5 8 4806
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20135
95 % 62 62 380
90 % 83 83 297
70 % 2251 2264 1
50 % 4565 4587 1
40 % 4565 4587 1
30 % 5365 5394 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20548
95 % 2 2 17914
90 % 15 15 2347
70 % 2215 2222 2
50 % 4566 4587 1
40 % 4566 4587 1
30 % 5366 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.