Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19376
95 % 5 8 5595
90 % 5 8 5594
70 % 5 8 5482
50 % 5 8 5167
40 % 5 8 4854
30 % 5 8 4383
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18077
95 % 50 50 454
90 % 79 79 275
70 % 1605 1617 3
50 % 3910 3934 1
40 % 3911 3935 1
30 % 4634 4663 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18442
95 % 2 2 16169
90 % 13 13 2577
70 % 1901 1909 1
50 % 3911 3934 1
40 % 3912 3935 1
30 % 4635 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.