Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19728
95 % 5 8 5697
90 % 5 8 5693
70 % 5 8 5577
50 % 5 8 5247
40 % 5 8 4935
30 % 5 8 4446
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18417
95 % 61 61 348
90 % 82 82 266
70 % 1636 1648 3
50 % 3988 4012 1
40 % 3990 4014 1
30 % 4721 4750 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18785
95 % 2 2 16433
90 % 13 13 2618
70 % 1937 1945 1
50 % 3989 4012 1
40 % 3991 4014 1
30 % 4722 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.