Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22576
95 % 5 8 6548
90 % 5 8 6532
70 % 5 8 6371
50 % 5 8 5959
40 % 5 8 5582
30 % 5 8 5000
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21092
95 % 62 62 443
90 % 84 84 303
70 % 2402 2416 1
50 % 4868 4892 1
40 % 4868 4892 1
30 % 5730 5759 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21527
95 % 2 2 18713
90 % 15 15 2453
70 % 2358 2366 2
50 % 4869 4892 1
40 % 4869 4892 1
30 % 5731 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures