Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21260
95 % 5 8 6176
90 % 5 8 6164
70 % 5 8 6025
50 % 5 8 5644
40 % 5 8 5284
30 % 5 8 4747
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19847
95 % 62 62 372
90 % 83 83 295
70 % 1816 1828 2
50 % 4477 4501 1
40 % 4477 4501 1
30 % 5274 5303 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20260
95 % 2 2 17673
90 % 15 15 2300
70 % 2170 2178 1
50 % 4478 4501 1
40 % 4478 4501 1
30 % 5275 5303 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.