Sequence Similarity Clusters for the Entities in PDB 2LTQ

Entity #1 | Chains: A,D
Disulfide bond formation protein B protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22181
95 % 5 8 6460
90 % 5 8 6442
70 % 5 8 6286
50 % 5 8 5878
40 % 5 8 5506
30 % 5 8 4936
Entity #2 | Chains: B,E
Fab fragment light chain protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20712
95 % 62 62 429
90 % 83 83 311
70 % 2348 2362 1
50 % 4757 4781 1
40 % 4757 4781 1
30 % 5606 5635 1
Entity #3 | Chains: C,F
Fab fragment heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21143
95 % 2 2 18425
90 % 15 15 2411
70 % 2303 2311 2
50 % 4758 4781 1
40 % 4758 4781 1
30 % 5607 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures