Sequence Similarity Clusters for the Entities in PDB 2JEB

Entity #1 | Chains: A
EXOSOME COMPLEX EXONUCLEASE 2 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 696
95 % 4 10 897 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 4 10 930
70 % 4 10 964
50 % 4 10 1009
40 % 9 19 765
30 % 9 20 745
Entity #2 | Chains: B
EXOSOME COMPLEX EXONUCLEASE 1 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 14981
95 % 4 10 898 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.6
PDBFlex
90 % 4 10 931
70 % 4 10 965
50 % 9 19 731
40 % 9 20 751
30 % 13 42 478
Entity #3 | Chains: I
EXOSOME COMPLEX RNA-BINDING PROTEIN 1 protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20138
95 % 4 6 9048 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 4 6 8968
70 % 4 6 8614
50 % 4 6 7799
40 % 4 6 7171
30 % 4 6 6337

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.