Sequence Similarity Clusters for the Entities in PDB 2JEA

Entity #1 | Chains: A
EXOSOME COMPLEX EXONUCLEASE 2 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 706
95 % 3 10 909 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 3 10 943
70 % 3 10 975
50 % 3 10 1020
40 % 7 19 775
30 % 7 20 754
Entity #2 | Chains: B
EXOSOME COMPLEX EXONUCLEASE 1 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15149
95 % 3 10 910 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.6
PDBFlex
90 % 3 10 944
70 % 3 10 976
50 % 7 19 741
40 % 7 20 759
30 % 11 42 481
Entity #3 | Chains: C
RNA rna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: I
EXOSOME COMPLEX RNA-BINDING PROTEIN 1 protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 20333
95 % 3 6 9146 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 3 6 9057
70 % 3 6 8686
50 % 3 6 7871
40 % 3 6 7239
30 % 3 6 6391

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.