Sequence Similarity Clusters for the Entities in PDB 2JDO

Entity #1 | Chains: A
RAC-BETA SERINE/THREONINE-PROTEIN KINASE protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 16 3081
95 % 3 16 3388 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.3
PDBFlex
90 % 3 16 3450
70 % 4 31 1531
50 % 8 84 528
40 % 102 370 130
30 % 662 4566 2
Entity #2 | Chains: C
GLYCOGEN SYNTHASE KINASE-3 BETA protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures