Sequence Similarity Clusters for the Entities in PDB 2JDO

Entity #1 | Chains: A
RAC-BETA SERINE/THREONINE-PROTEIN KINASE protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 16 2999
95 % 3 16 3308 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.3
PDBFlex
90 % 3 16 3365
70 % 4 31 1482
50 % 8 84 522
40 % 93 349 131
30 % 626 4475 2
Entity #2 | Chains: C
GLYCOGEN SYNTHASE KINASE-3 BETA protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures