Sequence Similarity Clusters for the Entities in PDB 2JA8

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 109 204
95 % 85 109 285
90 % 85 109 298
70 % 85 109 321
50 % 85 111 331
40 % 85 111 363
30 % 85 111 372
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 119 161
95 % 89 119 223
90 % 89 119 234
70 % 89 121 258
50 % 94 129 257
40 % 94 129 278
30 % 94 129 295
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 111 198
95 % 85 111 281
90 % 85 111 294
70 % 85 111 317
50 % 85 111 341
40 % 85 112 362
30 % 85 112 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 117 165
95 % 89 117 233
90 % 89 117 243
70 % 89 117 272
50 % 89 117 309
40 % 89 117 335
30 % 89 117 345
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*AP*UP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TP*TTP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 110 200
95 % 85 111 279
90 % 85 111 292
70 % 85 111 314
50 % 85 113 328
40 % 90 121 314
30 % 90 124 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 108 207
95 % 85 108 289
90 % 85 108 302
70 % 85 108 323
50 % 85 109 342
40 % 85 109 373
30 % 85 109 378
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 55 452
95 % 42 55 647
90 % 42 55 682
70 % 42 56 726
50 % 43 58 780
40 % 43 58 806
30 % 43 58 799
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 120 158
95 % 90 120 218
90 % 90 120 229
70 % 90 120 263
50 % 90 121 293
40 % 90 122 313
30 % 90 122 327
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 116 167
95 % 89 116 236
90 % 89 116 245
70 % 89 116 275
50 % 89 119 298
40 % 89 119 325
30 % 89 119 334
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 58 397
95 % 44 58 590
90 % 44 58 623
70 % 44 58 671
50 % 45 61 679
40 % 45 61 713
30 % 45 61 714
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 119 160
95 % 89 120 220
90 % 89 120 231
70 % 89 120 265
50 % 89 120 299
40 % 89 120 326
30 % 89 123 324
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 110 203
95 % 84 110 284
90 % 84 110 297
70 % 84 110 320
50 % 84 111 333
40 % 84 111 365
30 % 84 114 366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.