Sequence Similarity Clusters for the Entities in PDB 2JA8

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 114 212
95 % 87 114 299
90 % 87 114 313
70 % 87 114 342
50 % 87 124 339
40 % 87 124 369
30 % 87 124 373
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 131 173
95 % 91 131 237
90 % 91 131 247
70 % 91 141 263
50 % 96 149 258
40 % 96 149 280
30 % 96 149 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 116 208
95 % 87 116 294
90 % 87 116 307
70 % 87 116 337
50 % 87 116 392
40 % 87 117 410
30 % 87 117 409
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 127 177
95 % 89 127 247
90 % 89 127 255
70 % 89 127 286
50 % 89 127 320
40 % 89 127 343
30 % 89 127 352
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*AP*UP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TP*TTP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 115 209
95 % 87 116 289
90 % 87 116 301
70 % 87 116 332
50 % 87 126 334
40 % 92 134 323
30 % 92 137 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 111 214
95 % 85 111 308
90 % 85 111 322
70 % 85 111 351
50 % 85 112 404
40 % 85 112 441
30 % 85 112 434
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 60 506
95 % 44 60 709
90 % 44 60 740
70 % 44 61 772
50 % 45 63 786
40 % 45 63 813
30 % 45 63 814
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 132 169
95 % 92 132 232
90 % 92 132 243
70 % 92 132 278
50 % 92 133 304
40 % 92 142 302
30 % 92 142 312
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 126 178
95 % 89 126 249
90 % 89 126 257
70 % 89 126 289
50 % 89 137 298
40 % 89 137 315
30 % 89 137 329
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 63 468
95 % 46 63 657
90 % 46 63 685
70 % 46 63 729
50 % 47 74 594
40 % 47 74 631
30 % 47 74 636
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 131 172
95 % 91 132 235
90 % 91 132 246
70 % 91 132 279
50 % 91 132 309
40 % 91 132 333
30 % 91 143 310
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 115 210
95 % 86 115 298
90 % 86 115 311
70 % 86 115 341
50 % 86 116 385
40 % 86 116 420
30 % 86 119 399

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.