Sequence Similarity Clusters for the Entities in PDB 2JA8

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 114 209
95 % 87 114 296
90 % 87 114 308
70 % 87 114 336
50 % 87 124 332
40 % 87 124 359
30 % 87 124 366
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 128 174
95 % 91 128 239
90 % 91 128 249
70 % 91 138 263
50 % 96 146 259
40 % 96 146 279
30 % 96 146 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 116 204
95 % 87 116 291
90 % 87 116 303
70 % 87 116 330
50 % 87 116 369
40 % 87 117 393
30 % 87 117 393
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 124 180
95 % 89 124 249
90 % 89 124 256
70 % 89 124 292
50 % 89 124 323
40 % 89 124 345
30 % 89 124 352
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*AP*UP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TP*TTP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 115 205
95 % 87 116 286
90 % 87 116 297
70 % 87 116 326
50 % 87 126 328
40 % 92 134 317
30 % 92 137 321
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 111 211
95 % 85 111 305
90 % 85 111 318
70 % 85 111 344
50 % 85 112 388
40 % 85 112 427
30 % 85 112 419
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 60 493
95 % 44 60 697
90 % 44 60 728
70 % 44 61 753
50 % 45 63 771
40 % 45 63 801
30 % 45 63 802
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 129 170
95 % 92 129 233
90 % 92 129 242
70 % 92 129 275
50 % 92 130 304
40 % 92 139 306
30 % 92 139 315
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 123 182
95 % 89 123 254
90 % 89 123 262
70 % 89 123 297
50 % 89 134 297
40 % 89 134 320
30 % 89 134 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 63 445
95 % 46 63 635
90 % 46 63 671
70 % 46 63 711
50 % 47 74 584
40 % 47 74 621
30 % 47 74 630
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 128 173
95 % 91 129 236
90 % 91 129 245
70 % 91 129 277
50 % 91 129 312
40 % 91 129 333
30 % 91 140 311
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 115 207
95 % 86 115 295
90 % 86 115 307
70 % 86 115 335
50 % 86 116 365
40 % 86 116 401
30 % 86 119 386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.