Sequence Similarity Clusters for the Entities in PDB 2JA8

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 115 222
95 % 88 115 310
90 % 88 115 326
70 % 89 118 342
50 % 89 129 341
40 % 89 129 370
30 % 89 129 378
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 137 178
95 % 92 137 235
90 % 92 137 249
70 % 93 151 255
50 % 98 159 246
40 % 98 159 267
30 % 98 159 275
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 117 217
95 % 88 117 304
90 % 88 117 320
70 % 88 117 357
50 % 89 120 398
40 % 89 122 412
30 % 89 122 418
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 133 180
95 % 90 133 245
90 % 90 133 257
70 % 90 133 288
50 % 91 136 313
40 % 91 136 328
30 % 91 136 340
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*AP*UP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TP*TTP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 116 220
95 % 88 117 300
90 % 88 117 315
70 % 89 122 324
50 % 89 131 336
40 % 94 139 317
30 % 94 142 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 112 226
95 % 86 112 314
90 % 86 112 333
70 % 86 112 371
50 % 86 114 419
40 % 86 114 456
30 % 86 114 453
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 61 548
95 % 45 61 760
90 % 45 61 788
70 % 45 62 816
50 % 47 67 741
40 % 47 67 777
30 % 47 67 767
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 138 174
95 % 93 138 231
90 % 93 138 243
70 % 94 141 274
50 % 94 143 294
40 % 94 152 295
30 % 94 152 307
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 132 183
95 % 90 132 249
90 % 90 132 261
70 % 90 132 289
50 % 91 147 286
40 % 91 147 304
30 % 91 147 318
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 64 488
95 % 47 64 683
90 % 47 64 711
70 % 47 64 763
50 % 49 79 562
40 % 49 79 606
30 % 49 79 604
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 137 177
95 % 92 138 232
90 % 92 138 244
70 % 92 138 279
50 % 93 141 301
40 % 93 141 315
30 % 93 153 304
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 116 221
95 % 87 116 309
90 % 87 116 325
70 % 88 119 339
50 % 88 121 390
40 % 88 121 417
30 % 88 124 411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.