Sequence Similarity Clusters for the Entities in PDB 2JA8

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 113 206
95 % 87 113 288
90 % 87 113 302
70 % 87 113 325
50 % 87 123 325
40 % 87 123 350
30 % 87 123 360
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 124 175
95 % 91 124 241
90 % 91 124 251
70 % 91 134 245
50 % 96 142 249
40 % 96 142 272
30 % 96 142 287
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 115 203
95 % 87 115 285
90 % 87 115 299
70 % 87 115 323
50 % 87 115 350
40 % 87 116 369
30 % 87 116 379
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 120 181
95 % 89 120 251
90 % 89 120 260
70 % 89 120 295
50 % 89 120 323
40 % 89 120 348
30 % 89 120 357
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*AP*UP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TP*TTP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 114 204
95 % 87 115 281
90 % 87 115 295
70 % 87 115 319
50 % 87 125 319
40 % 92 133 303
30 % 92 136 306
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 110 209
95 % 85 110 297
90 % 85 110 312
70 % 85 110 332
50 % 85 111 355
40 % 85 111 387
30 % 85 111 392
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 59 441
95 % 44 59 649
90 % 44 59 693
70 % 44 60 705
50 % 45 62 754
40 % 45 62 787
30 % 45 62 793
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 125 169
95 % 92 125 234
90 % 92 125 246
70 % 92 125 277
50 % 92 126 306
40 % 92 135 299
30 % 92 135 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 119 185
95 % 89 119 252
90 % 89 119 261
70 % 89 119 298
50 % 89 130 292
40 % 89 130 315
30 % 89 130 330
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 62 394
95 % 46 62 578
90 % 46 62 608
70 % 46 62 656
50 % 47 73 573
40 % 47 73 605
30 % 47 73 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 124 174
95 % 91 125 235
90 % 91 125 247
70 % 91 125 279
50 % 91 125 315
40 % 91 125 334
30 % 91 136 309
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 114 205
95 % 86 114 287
90 % 86 114 301
70 % 86 114 324
50 % 86 115 345
40 % 86 115 373
30 % 86 118 376

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.