Sequence Similarity Clusters for the Entities in PDB 2JA7

Entity #1 | Chains: 1,4
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G,S
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 62 387
95 % 43 62 572
90 % 43 62 604
70 % 43 62 653
50 % 44 73 562
40 % 44 73 595
30 % 44 73 603
Entity #11 | Chains: H,T
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 123 158
95 % 85 124 218
90 % 85 124 229
70 % 85 124 262
50 % 85 124 305
40 % 85 124 326
30 % 85 135 308
Entity #12 | Chains: I,U
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 114 202
95 % 81 114 284
90 % 81 114 298
70 % 81 114 322
50 % 81 115 341
40 % 81 115 368
30 % 81 118 371
Entity #13 | Chains: J,V
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 123 159
95 % 85 123 224
90 % 85 123 235
70 % 85 133 215
50 % 90 141 243
40 % 90 141 268
30 % 90 141 283
Entity #14 | Chains: K,W
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 115 200
95 % 81 115 282
90 % 81 115 295
70 % 81 115 321
50 % 81 115 345
40 % 81 116 364
30 % 81 116 375
Entity #15 | Chains: L,X
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 119 166
95 % 83 119 236
90 % 83 119 245
70 % 83 119 282
50 % 83 119 315
40 % 83 119 341
30 % 83 119 352
Entity #2 | Chains: 2,5
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TTP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: 3,6
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,M
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 113 203
95 % 81 113 285
90 % 81 113 299
70 % 81 113 323
50 % 81 123 316
40 % 81 123 342
30 % 81 123 353
Entity #5 | Chains: B,N
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 114 201
95 % 81 115 278
90 % 81 115 291
70 % 81 115 317
50 % 81 125 308
40 % 86 133 294
30 % 86 136 302
Entity #6 | Chains: C,O
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 110 207
95 % 79 110 294
90 % 79 110 309
70 % 79 110 330
50 % 79 111 349
40 % 79 111 380
30 % 79 111 388
Entity #7 | Chains: D,P
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 59 433
95 % 41 59 639
90 % 41 59 685
70 % 41 60 699
50 % 42 62 751
40 % 42 62 780
30 % 42 62 788
Entity #8 | Chains: E,Q
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 124 152
95 % 86 124 214
90 % 86 124 226
70 % 86 124 258
50 % 86 125 294
40 % 86 134 293
30 % 86 134 314
Entity #9 | Chains: F,R
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 118 168
95 % 83 118 241
90 % 83 118 251
70 % 83 118 286
50 % 83 129 280
40 % 83 129 308
30 % 83 129 328

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.