Sequence Similarity Clusters for the Entities in PDB 2JA7

Entity #1 | Chains: 1,4
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G,S
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 62 396
95 % 43 62 579
90 % 43 62 609
70 % 43 62 657
50 % 44 73 575
40 % 44 73 608
30 % 44 73 619
Entity #11 | Chains: H,T
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 124 175
95 % 85 125 236
90 % 85 125 247
70 % 85 125 279
50 % 85 125 316
40 % 85 125 336
30 % 85 136 313
Entity #12 | Chains: I,U
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 114 205
95 % 81 114 287
90 % 81 114 301
70 % 81 114 325
50 % 81 115 347
40 % 81 115 380
30 % 81 118 378
Entity #13 | Chains: J,V
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 124 176
95 % 85 124 241
90 % 85 124 251
70 % 85 134 254
50 % 90 142 252
40 % 90 142 273
30 % 90 142 289
Entity #14 | Chains: K,W
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 115 203
95 % 81 115 285
90 % 81 115 299
70 % 81 115 323
50 % 81 115 354
40 % 81 116 376
30 % 81 116 382
Entity #15 | Chains: L,X
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 120 181
95 % 83 120 251
90 % 83 120 260
70 % 83 120 296
50 % 83 120 325
40 % 83 120 351
30 % 83 120 359
Entity #2 | Chains: 2,5
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TTP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: 3,6
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,M
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 113 206
95 % 81 113 288
90 % 81 113 302
70 % 81 113 326
50 % 81 123 327
40 % 81 123 353
30 % 81 123 362
Entity #5 | Chains: B,N
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 114 204
95 % 81 115 281
90 % 81 115 295
70 % 81 115 319
50 % 81 125 321
40 % 86 133 307
30 % 86 136 310
Entity #6 | Chains: C,O
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 110 209
95 % 79 110 299
90 % 79 110 314
70 % 79 110 334
50 % 79 111 360
40 % 79 111 393
30 % 79 111 395
Entity #7 | Chains: D,P
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 59 445
95 % 41 59 652
90 % 41 59 696
70 % 41 60 709
50 % 42 62 755
40 % 42 62 789
30 % 42 62 793
Entity #8 | Chains: E,Q
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 125 171
95 % 86 125 235
90 % 86 125 246
70 % 86 125 277
50 % 86 126 308
40 % 86 135 301
30 % 86 135 317
Entity #9 | Chains: F,R
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 119 186
95 % 83 119 252
90 % 83 119 261
70 % 83 119 298
50 % 83 130 294
40 % 83 130 318
30 % 83 130 332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.