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An Information Portal to 109093 Biological Macromolecular Structures

CPD lesion containing RNA Polymerase II elongation complex C
Sequence Clustering and Redundancy Reduction Results
2JA7
Sequence Clusters for the Sequence Entities in PDB 2JA7
Entity #1: Chains: 1,4 - 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G,S - DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 53 429
95% 37 53 625
90% 37 53 655
70% 37 53 705
50% 38 55 701
40% 38 55 731
30% 38 55 732
Entity #11: Chains: H,T - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 107 187
95% 76 108 260
90% 76 108 273
70% 76 108 292
50% 76 108 321
40% 76 108 353
30% 76 110 347
Entity #12: Chains: I,U - DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 102 205
95% 72 102 289
90% 72 102 304
70% 72 102 323
50% 72 103 348
40% 72 103 375
30% 72 103 380
Entity #13: Chains: J,V - DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 107 188
95% 76 107 267
90% 76 107 279
70% 76 108 289
50% 81 116 276
40% 81 116 306
30% 81 116 321
Entity #14: Chains: K,W - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 103 201
95% 72 103 286
90% 72 103 301
70% 72 103 318
50% 72 103 354
40% 72 104 372
30% 72 104 377
Entity #15: Chains: L,X - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 106 190
95% 76 106 269
90% 76 106 283
70% 76 106 301
50% 76 106 330
40% 76 106 360
30% 76 106 367
Entity #2: Chains: 2,5 - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TTP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: 3,6 - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A,M - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 101 206
95% 72 101 290
90% 72 101 305
70% 72 101 324
50% 72 102 350
40% 72 102 377
30% 72 102 382
Entity #5: Chains: B,N - DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 102 203
95% 72 103 283
90% 72 103 297
70% 72 103 316
50% 72 104 342
40% 77 112 320
30% 77 112 330
Entity #6: Chains: C,O - DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 101 207
95% 72 101 291
90% 72 101 306
70% 72 101 325
50% 72 102 352
40% 72 102 380
30% 72 102 386
Entity #7: Chains: D,P - DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 51 452
95% 35 51 656
90% 35 51 689
70% 35 52 733
50% 35 52 823
40% 35 52 844
30% 35 52 849
Entity #8: Chains: E,Q - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 108 186
95% 77 108 259
90% 77 108 272
70% 77 108 291
50% 77 109 310
40% 77 109 338
30% 77 109 349
Entity #9: Chains: F,R - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 105 194
95% 76 105 278
90% 76 105 290
70% 76 105 308
50% 76 107 320
40% 76 107 352
30% 76 107 357
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.