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CPD lesion containing RNA Polymerase II elongation complex C
Sequence Clustering and Redundancy Reduction Results
2JA7
Sequence Clusters for the Sequence Entities in PDB 2JA7
Entity #1: Chains: 1,4 - 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G,S - DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 53 432
95% 37 53 630
90% 37 53 660
70% 37 53 711
50% 38 55 708
40% 38 55 738
30% 38 55 739
Entity #11: Chains: H,T - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 107 188
95% 76 108 263
90% 76 108 277
70% 76 108 297
50% 76 108 325
40% 76 108 358
30% 76 110 350
Entity #12: Chains: I,U - DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 102 207
95% 72 102 291
90% 72 102 309
70% 72 102 327
50% 72 103 350
40% 72 103 379
30% 72 103 385
Entity #13: Chains: J,V - DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 107 189
95% 76 107 269
90% 76 107 282
70% 76 108 293
50% 81 116 277
40% 81 116 310
30% 81 116 322
Entity #14: Chains: K,W - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 103 202
95% 72 103 287
90% 72 103 303
70% 72 103 321
50% 72 103 356
40% 72 104 376
30% 72 104 382
Entity #15: Chains: L,X - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 106 192
95% 76 106 271
90% 76 106 285
70% 76 106 303
50% 76 106 332
40% 76 106 365
30% 76 106 371
Entity #2: Chains: 2,5 - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TP*TTP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: 3,6 - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: A,M - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 101 208
95% 72 101 292
90% 72 101 310
70% 72 101 329
50% 72 102 352
40% 72 102 381
30% 72 102 387
Entity #5: Chains: B,N - DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 102 205
95% 72 103 284
90% 72 103 298
70% 72 103 318
50% 72 104 345
40% 77 112 324
30% 77 112 332
Entity #6: Chains: C,O - DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 101 209
95% 72 101 293
90% 72 101 311
70% 72 101 330
50% 72 102 354
40% 72 102 384
30% 72 102 390
Entity #7: Chains: D,P - DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 51 457
95% 35 51 664
90% 35 51 696
70% 35 52 744
50% 35 52 834
40% 35 52 856
30% 35 52 859
Entity #8: Chains: E,Q - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 108 187
95% 77 108 262
90% 77 108 276
70% 77 108 296
50% 77 109 314
40% 77 109 344
30% 77 109 353
Entity #9: Chains: F,R - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 105 196
95% 76 105 279
90% 76 105 291
70% 76 105 310
50% 76 107 324
40% 76 107 357
30% 76 107 360
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.