Sequence Similarity Clusters for the Entities in PDB 2JA6

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 115 221
95 % 100 115 308
90 % 100 115 325
70 % 100 115 364
50 % 101 126 371
40 % 101 126 402
30 % 101 126 402
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 137 178
95 % 105 137 234
90 % 105 137 247
70 % 106 148 262
50 % 112 156 255
40 % 112 156 275
30 % 112 156 280
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 117 216
95 % 100 117 300
90 % 100 117 317
70 % 100 117 354
50 % 100 117 415
40 % 101 119 435
30 % 101 119 436
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 133 180
95 % 103 133 242
90 % 103 133 254
70 % 103 133 287
50 % 103 133 323
40 % 103 133 343
30 % 103 133 347
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TTP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 116 219
95 % 100 117 297
90 % 100 117 313
70 % 100 117 351
50 % 101 128 361
40 % 107 136 327
30 % 107 139 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 112 225
95 % 98 112 313
90 % 98 112 332
70 % 98 112 369
50 % 99 114 419
40 % 99 114 455
30 % 99 114 451
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 61 544
95 % 51 61 756
90 % 51 61 784
70 % 51 62 809
50 % 52 64 817
40 % 52 64 847
30 % 52 64 833
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 138 174
95 % 106 138 231
90 % 106 138 243
70 % 106 138 277
50 % 107 140 304
40 % 107 149 299
30 % 107 149 312
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 132 182
95 % 103 132 246
90 % 103 132 257
70 % 103 132 289
50 % 104 144 296
40 % 104 144 312
30 % 104 144 324
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 64 485
95 % 53 64 680
90 % 53 64 709
70 % 53 64 756
50 % 55 76 602
40 % 55 76 632
30 % 55 76 646
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 137 177
95 % 105 138 232
90 % 105 138 244
70 % 105 138 279
50 % 105 138 312
40 % 105 138 326
30 % 106 150 309
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 116 220
95 % 99 116 307
90 % 99 116 324
70 % 99 116 362
50 % 100 118 407
40 % 100 118 438
30 % 100 121 428

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.