POP-OUT | CLOSE
 
CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX B
Sequence Clustering and Redundancy Reduction Results
2JA6
Sequence Clusters for the Sequence Entities in PDB 2JA6
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 96 203
95% 88 96 288
90% 88 96 303
70% 88 96 321
50% 89 97 345
40% 89 97 366
30% 89 97 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 102 186
95% 92 102 265
90% 92 102 277
70% 93 103 286
50% 99 112 272
40% 99 112 301
30% 99 112 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 98 200
95% 88 98 284
90% 88 98 299
70% 88 98 315
50% 88 98 354
40% 89 99 362
30% 89 99 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 101 188
95% 92 101 270
90% 92 101 282
70% 92 101 300
50% 92 101 335
40% 92 101 357
30% 92 101 370
Entity #13: Chains: N - 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TTP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 97 201
95% 88 98 281
90% 88 98 296
70% 88 98 313
50% 89 99 339
40% 95 108 308
30% 95 108 326
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 96 205
95% 88 96 289
90% 88 96 304
70% 88 96 322
50% 89 97 348
40% 89 97 368
30% 89 97 383
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 49 447
95% 44 49 646
90% 44 49 679
70% 44 50 712
50% 44 50 789
40% 44 50 807
30% 44 50 809
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 103 180
95% 93 103 254
90% 93 103 266
70% 93 103 291
50% 94 104 309
40% 94 104 336
30% 94 104 348
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 100 190
95% 92 100 274
90% 92 100 286
70% 92 100 306
50% 93 102 325
40% 93 102 347
30% 93 102 360
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 51 417
95% 46 51 608
90% 46 51 639
70% 46 51 678
50% 48 53 648
40% 48 53 678
30% 48 53 679
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 102 185
95% 92 103 255
90% 92 103 268
70% 92 103 292
50% 92 103 326
40% 92 103 348
30% 93 105 344
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 97 202
95% 87 97 287
90% 87 97 302
70% 87 97 319
50% 88 98 343
40% 88 98 364
30% 88 98 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.