Sequence Similarity Clusters for the Entities in PDB 2JA6

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 114 206
95 % 99 114 291
90 % 99 114 304
70 % 99 114 329
50 % 100 124 328
40 % 100 124 354
30 % 100 124 361
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 125 174
95 % 104 125 238
90 % 104 125 248
70 % 105 135 258
50 % 111 143 253
40 % 111 143 272
30 % 111 143 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 99 116 202
95 % 99 116 287
90 % 99 116 299
70 % 99 116 324
50 % 99 116 353
40 % 100 117 378
30 % 100 117 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 121 181
95 % 102 121 251
90 % 102 121 259
70 % 102 121 297
50 % 102 121 324
40 % 102 121 348
30 % 102 121 354
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TP*TTP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 115 203
95 % 99 116 284
90 % 99 116 295
70 % 99 116 321
50 % 100 126 322
40 % 106 134 310
30 % 106 137 311
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 111 209
95 % 97 111 299
90 % 97 111 314
70 % 97 111 335
50 % 98 112 360
40 % 98 112 396
30 % 98 112 396
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 60 443
95 % 50 60 650
90 % 50 60 689
70 % 50 61 712
50 % 51 63 749
40 % 51 63 786
30 % 51 63 788
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 126 169
95 % 105 126 234
90 % 105 126 244
70 % 105 126 274
50 % 106 127 307
40 % 106 136 303
30 % 106 136 319
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 120 184
95 % 102 120 254
90 % 102 120 262
70 % 102 120 299
50 % 103 131 293
40 % 103 131 316
30 % 103 131 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 63 395
95 % 52 63 585
90 % 52 63 616
70 % 52 63 659
50 % 54 74 570
40 % 54 74 606
30 % 54 74 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 125 173
95 % 104 126 235
90 % 104 126 245
70 % 104 126 277
50 % 104 126 314
40 % 104 126 336
30 % 105 137 314
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 115 205
95 % 98 115 290
90 % 98 115 303
70 % 98 115 328
50 % 99 116 350
40 % 99 116 382
30 % 99 119 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.