Sequence Similarity Clusters for the Entities in PDB 2JA5

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 113 203
95 % 88 113 285
90 % 88 113 298
70 % 88 113 320
50 % 88 123 313
40 % 88 123 340
30 % 88 123 349
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 123 159
95 % 92 123 220
90 % 92 123 233
70 % 92 133 214
50 % 97 141 241
40 % 97 141 267
30 % 97 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 115 199
95 % 88 115 279
90 % 88 115 292
70 % 88 115 316
50 % 88 115 341
40 % 88 116 359
30 % 88 116 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 119 164
95 % 90 119 233
90 % 90 119 243
70 % 90 119 278
50 % 90 119 312
40 % 90 119 339
30 % 90 119 348
Entity #13 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TTP*TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 114 200
95 % 88 115 277
90 % 88 115 290
70 % 88 115 315
50 % 88 125 307
40 % 93 133 292
30 % 93 136 300
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 110 207
95 % 86 110 294
90 % 86 110 307
70 % 86 110 328
50 % 86 111 344
40 % 86 111 378
30 % 86 111 384
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 59 410
95 % 45 59 609
90 % 45 59 646
70 % 45 60 676
50 % 46 62 742
40 % 46 62 772
30 % 46 62 779
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 124 152
95 % 93 124 210
90 % 93 124 222
70 % 93 124 255
50 % 93 125 292
40 % 93 134 291
30 % 93 134 311
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 118 166
95 % 90 118 239
90 % 90 118 250
70 % 90 118 282
50 % 90 129 277
40 % 90 129 304
30 % 90 129 324
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 62 381
95 % 47 62 560
90 % 47 62 590
70 % 47 62 637
50 % 48 73 548
40 % 48 73 584
30 % 48 73 591
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 123 158
95 % 92 124 214
90 % 92 124 225
70 % 92 124 259
50 % 92 124 303
40 % 92 124 325
30 % 92 135 306
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 114 202
95 % 87 114 284
90 % 87 114 297
70 % 87 114 319
50 % 87 115 337
40 % 87 115 364
30 % 87 118 365

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.