Sequence Similarity Clusters for the Entities in PDB 2JA5

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 115 229
95 % 89 115 321
90 % 89 115 339
70 % 91 120 356
50 % 91 132 368
40 % 91 132 393
30 % 91 132 397
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 142 175
95 % 93 142 236
90 % 93 142 250
70 % 95 159 250
50 % 100 167 246
40 % 100 167 264
30 % 100 167 270
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 117 224
95 % 89 117 315
90 % 89 117 333
70 % 89 117 369
50 % 91 122 416
40 % 91 124 434
30 % 91 124 435
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 138 183
95 % 91 138 244
90 % 91 138 259
70 % 91 138 289
50 % 93 143 313
40 % 93 143 328
30 % 93 143 336
Entity #13 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TTP*TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 116 226
95 % 89 117 313
90 % 89 117 329
70 % 91 124 339
50 % 91 134 357
40 % 96 142 324
30 % 96 145 330
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 112 232
95 % 87 112 326
90 % 87 112 345
70 % 87 112 378
50 % 87 114 439
40 % 87 114 470
30 % 87 114 471
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 61 563
95 % 46 61 781
90 % 46 61 809
70 % 46 62 833
50 % 49 69 753
40 % 49 69 785
30 % 49 69 780
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 143 172
95 % 94 143 233
90 % 94 143 248
70 % 96 148 271
50 % 96 150 291
40 % 96 160 284
30 % 96 160 293
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 137 185
95 % 91 137 247
90 % 91 137 262
70 % 91 137 294
50 % 93 155 279
40 % 93 155 298
30 % 93 155 307
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 64 522
95 % 48 64 715
90 % 48 64 745
70 % 48 64 796
50 % 51 82 567
40 % 51 82 605
30 % 51 82 595
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 142 174
95 % 93 143 234
90 % 93 143 249
70 % 93 143 280
50 % 95 148 296
40 % 95 148 311
30 % 95 161 292
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 116 228
95 % 88 116 320
90 % 88 116 338
70 % 90 121 355
50 % 90 123 406
40 % 90 123 436
30 % 90 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.