POP-OUT | CLOSE

An Information Portal to 108395 Biological Macromolecular Structures

CPD lesion containing RNA Polymerase II elongation complex A
Sequence Clustering and Redundancy Reduction Results
2JA5
Sequence Clusters for the Sequence Entities in PDB 2JA5
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 101 204
95% 79 101 289
90% 79 101 304
70% 79 101 321
50% 79 102 348
40% 79 102 374
30% 79 102 380
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 107 188
95% 83 107 263
90% 83 107 275
70% 83 108 287
50% 88 116 274
40% 88 116 304
30% 88 116 319
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 103 200
95% 79 103 283
90% 79 103 298
70% 79 103 317
50% 79 103 352
40% 79 104 368
30% 79 104 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 106 190
95% 83 106 265
90% 83 106 279
70% 83 106 298
50% 83 106 327
40% 83 106 355
30% 83 106 363
Entity #13: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: T - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TTP*TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: N - 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 102 201
95% 79 103 280
90% 79 103 294
70% 79 103 314
50% 79 104 339
40% 84 112 317
30% 84 112 327
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 101 205
95% 79 101 291
90% 79 101 306
70% 79 101 323
50% 79 102 350
40% 79 102 377
30% 79 102 384
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 51 450
95% 39 51 652
90% 39 51 684
70% 39 52 726
50% 39 52 816
40% 39 52 835
30% 39 52 841
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 108 186
95% 84 108 257
90% 84 108 270
70% 84 108 289
50% 84 109 308
40% 84 109 335
30% 84 109 347
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 105 193
95% 83 105 274
90% 83 105 286
70% 83 105 305
50% 83 107 318
40% 83 107 349
30% 83 107 354
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 53 426
95% 41 53 622
90% 41 53 652
70% 41 53 701
50% 42 55 692
40% 42 55 717
30% 42 55 719
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 107 187
95% 83 108 258
90% 83 108 271
70% 83 108 290
50% 83 108 319
40% 83 108 350
30% 83 110 345
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 102 203
95% 78 102 288
90% 78 102 303
70% 78 102 320
50% 78 103 346
40% 78 103 372
30% 78 103 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.