Sequence Similarity Clusters for the Entities in PDB 2JA5

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 114 211
95 % 88 114 299
90 % 88 114 313
70 % 88 114 344
50 % 88 124 346
40 % 88 124 378
30 % 88 124 380
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 131 172
95 % 92 131 236
90 % 92 131 246
70 % 92 141 263
50 % 97 149 257
40 % 97 149 279
30 % 97 149 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 116 207
95 % 88 116 294
90 % 88 116 307
70 % 88 116 338
50 % 88 116 397
40 % 88 117 419
30 % 88 117 420
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 127 178
95 % 90 127 246
90 % 90 127 254
70 % 90 127 285
50 % 90 127 321
40 % 90 127 346
30 % 90 127 354
Entity #13 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TTP*TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 115 208
95 % 88 116 288
90 % 88 116 300
70 % 88 116 334
50 % 88 126 336
40 % 93 134 322
30 % 93 137 327
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 111 213
95 % 86 111 307
90 % 86 111 322
70 % 86 111 358
50 % 86 112 411
40 % 86 112 447
30 % 86 112 441
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 60 507
95 % 45 60 712
90 % 45 60 742
70 % 45 61 775
50 % 46 63 789
40 % 46 63 816
30 % 46 63 817
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 132 169
95 % 93 132 231
90 % 93 132 242
70 % 93 132 277
50 % 93 133 303
40 % 93 142 302
30 % 93 142 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 126 179
95 % 90 126 248
90 % 90 126 256
70 % 90 126 288
50 % 90 137 298
40 % 90 137 316
30 % 90 137 330
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 63 467
95 % 47 63 657
90 % 47 63 685
70 % 47 63 732
50 % 48 74 596
40 % 48 74 630
30 % 48 74 635
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 131 171
95 % 92 132 234
90 % 92 132 245
70 % 92 132 278
50 % 92 132 308
40 % 92 132 332
30 % 92 143 311
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 115 209
95 % 87 115 298
90 % 87 115 311
70 % 87 115 343
50 % 87 116 394
40 % 87 116 427
30 % 87 119 415

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.