POP-OUT | CLOSE

An Information Portal to 105906 Biological Macromolecular Structures

CPD lesion containing RNA Polymerase II elongation complex A
Sequence Clustering and Redundancy Reduction Results
2JA5
Sequence Clusters for the Sequence Entities in PDB 2JA5
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 96 209
95% 77 96 294
90% 77 96 311
70% 77 96 328
50% 77 97 355
40% 77 97 377
30% 77 97 388
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 102 191
95% 81 102 269
90% 81 102 283
70% 81 103 295
50% 86 111 277
40% 86 111 306
30% 86 111 322
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 98 205
95% 77 98 289
90% 77 98 306
70% 77 98 322
50% 77 98 362
40% 77 99 373
30% 77 99 383
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 101 193
95% 81 101 274
90% 81 101 288
70% 81 101 305
50% 81 101 343
40% 81 101 367
30% 81 101 378
Entity #13: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: T - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *CP*TP*TTP*TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: N - 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 97 206
95% 77 98 286
90% 77 98 302
70% 77 98 320
50% 77 99 348
40% 82 107 316
30% 82 107 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 96 211
95% 77 96 296
90% 77 96 313
70% 77 96 329
50% 77 97 358
40% 77 97 380
30% 77 97 390
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPTIDE protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 49 466
95% 39 49 666
90% 39 49 701
70% 39 50 742
50% 39 50 826
40% 39 50 852
30% 39 50 850
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 103 186
95% 82 103 263
90% 82 103 276
70% 82 103 298
50% 82 104 324
40% 82 104 348
30% 82 104 356
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 100 195
95% 81 100 279
90% 81 100 293
70% 81 100 312
50% 81 102 334
40% 81 102 360
30% 81 102 370
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 51 424
95% 41 51 618
90% 41 51 652
70% 41 51 711
50% 42 53 691
40% 42 53 717
30% 42 53 717
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 102 189
95% 81 103 265
90% 81 103 278
70% 81 103 299
50% 81 103 335
40% 81 103 361
30% 81 105 351
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 97 207
95% 76 97 292
90% 76 97 309
70% 76 97 325
50% 76 98 354
40% 76 98 376
30% 76 98 387
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.