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STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE II.
Sequence Clustering and Redundancy Reduction Results
2J03
Sequence Clusters for the Sequence Entities in PDB 2J03
Entity #1: Chains: 0 - 50S RIBOSOMAL PROTEIN L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 149 78
95% 66 165 92
90% 66 165 101
70% 66 165 125
50% 109 306 63
40% 109 306 83
30% 109 306 104
Entity #10: Chains: A - 23S RIBOSOMAL RNA rna, length: 2787 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: B - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: C - 50S RIBOSOMAL PROTEIN L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 69 310
95% 25 93 297
90% 25 94 311
70% 25 94 331
50% 26 132 244
40% 26 132 275
30% 31 174 204
Entity #13: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 59
95% 65 164 100
90% 65 164 108
70% 67 186 112
50% 108 301 71
40% 108 301 94
30% 108 301 115
Entity #14: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 60
95% 65 164 102
90% 65 164 110
70% 65 164 131
50% 108 306 66
40% 108 306 86
30% 108 307 110
Entity #15: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 148 84
95% 65 164 101
90% 65 164 109
70% 65 164 130
50% 67 191 146
40% 67 191 173
30% 109 308 106
Entity #16: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 149 81
95% 66 165 95
90% 66 165 103
70% 68 187 109
50% 110 306 64
40% 110 306 84
30% 110 306 107
Entity #17: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 62
95% 65 164 103
90% 65 164 111
70% 65 164 132
50% 68 196 140
40% 109 310 80
30% 212 449 51
Entity #18: Chains: I - 50S RIBOSOMAL PROTEIN L9 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 110 164
95% 60 132 165
90% 60 132 176
70% 60 132 208
50% 60 137 240
40% 93 245 133
30% 93 245 153
Entity #19: Chains: N - 50S RIBOSOMAL PROTEIN L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 159 72
95% 65 159 120
90% 65 159 128
70% 65 159 148
50% 106 283 85
40% 106 283 106
30% 106 284 129
Entity #2: Chains: 1 - 50S RIBOSOMAL PROTEIN L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 139 107
95% 65 161 118
90% 65 161 126
70% 65 161 145
50% 65 161 185
40% 65 161 215
30% 65 161 234
Entity #20: Chains: O - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 145 98
95% 65 164 106
90% 65 164 114
70% 67 186 113
50% 109 314 57
40% 109 315 76
30% 212 454 46
Entity #21: Chains: P - 50S RIBOSOMAL PROTEIN L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 63
95% 65 164 104
90% 65 164 112
70% 65 164 133
50% 65 166 173
40% 108 303 89
30% 211 446 54
Entity #22: Chains: Q - 50S RIBOSOMAL PROTEIN L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 149 83
95% 65 165 98
90% 65 165 106
70% 67 190 108
50% 108 305 67
40% 108 305 87
30% 108 305 111
Entity #23: Chains: R - 50S RIBOSOMAL PROTEIN L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 169 50
95% 66 169 86
90% 66 169 95
70% 66 169 117
50% 109 305 59
40% 109 307 77
30% 109 309 98
Entity #24: Chains: S - 50S RIBOSOMAL PROTEIN L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 143 101
95% 65 143 145
90% 65 143 158
70% 65 143 184
50% 108 302 69
40% 108 302 92
30% 108 302 113
Entity #25: Chains: T - 50S RIBOSOMAL PROTEIN L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 148 85
95% 65 164 105
90% 65 164 113
70% 65 164 134
50% 65 164 177
40% 65 164 209
30% 65 164 227
Entity #26: Chains: U - 50S RIBOSOMAL PROTEIN L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 156 75
95% 65 164 107
90% 65 164 115
70% 65 164 135
50% 109 308 61
40% 109 309 79
30% 109 309 102
Entity #27: Chains: V - 50S RIBOSOMAL PROTEIN L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 65
95% 65 164 109
90% 65 164 117
70% 65 164 137
50% 67 192 145
40% 108 303 90
30% 108 303 112
Entity #28: Chains: W - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 171 53
95% 67 172 88
90% 67 172 98
70% 67 172 119
50% 108 288 79
40% 108 288 104
30% 108 290 121
Entity #29: Chains: X - 50S RIBOSOMAL PROTEIN L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 165 58
95% 65 165 99
90% 65 165 107
70% 65 165 129
50% 67 189 149
40% 108 309 82
30% 175 387 69
Entity #3: Chains: 2 - 50S RIBOSOMAL PROTEIN L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 152 79
95% 65 155 124
90% 65 155 132
70% 65 155 154
50% 65 155 200
40% 106 278 111
30% 108 302 114
Entity #30: Chains: Y - 50S RIBOSOMAL PROTEIN L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 64
95% 65 164 108
90% 65 164 116
70% 65 164 136
50% 65 166 174
40% 106 283 107
30% 106 285 128
Entity #31: Chains: Z - 50S RIBOSOMAL PROTEIN L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 61
95% 66 165 94
90% 66 165 102
70% 66 165 127
50% 66 165 172
40% 66 165 204
30% 66 165 223
Entity #32: Chains: J - 50S RIBOSOMAL PROTEIN L10 protein, length: 173 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 12 3776
95% 4 12 4368
90% 4 12 4392
70% 4 12 4344
50% 4 12 4170
40% 4 12 3938
30% 13 33 1354
Entity #33: Chains: K - 50S RIBOSOMAL PROTEIN L11 protein, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 38 586
95% 12 41 703
90% 12 41 735
70% 14 63 473
50% 56 204 122
40% 56 207 149
30% 56 209 173
Entity #34: Chains: L,M - 50S RIBOSOMAL PROTEIN L7 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10151
95% 3 3 9914
90% 3 3 9772
70% 3 3 9260
50% 7 20 1193
40% 7 20 1212
30% 7 21 1130
Entity #35: Chains: 9 - 50S RIBOSOMAL PROTEIN L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 118 133
95% 41 118 193
90% 41 118 206
70% 43 144 183
50% 84 256 102
40% 84 256 127
30% 84 256 145
Entity #4: Chains: 3 - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 171 52
95% 66 171 90
90% 66 171 99
70% 66 171 120
50% 66 171 168
40% 109 309 81
30% 109 309 103
Entity #5: Chains: 4 - 50S RIBOSOMAL PROTEIN L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 136 109
95% 65 136 158
90% 65 136 170
70% 65 136 200
50% 65 174 167
40% 65 174 194
30% 65 174 217
Entity #6: Chains: 5 - 50S RIBOSOMAL PROTEIN L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 148 86
95% 65 156 123
90% 65 156 131
70% 65 156 152
50% 67 188 151
40% 108 300 95
30% 108 300 116
Entity #7: Chains: 6 - 50S RIBOSOMAL PROTEIN L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 162 69
95% 65 162 115
90% 65 162 123
70% 65 162 143
50% 65 163 181
40% 108 297 97
30% 108 297 117
Entity #8: Chains: 7 - 50S RIBOSOMAL PROTEIN L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 67
95% 65 164 111
90% 65 164 119
70% 65 164 139
50% 65 164 178
40% 65 164 210
30% 65 164 228
Entity #9: Chains: 8 - 50S RIBOSOMAL PROTEIN L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 164 66
95% 65 164 110
90% 65 164 118
70% 65 164 138
50% 67 190 147
40% 67 190 174
30% 67 190 195
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.