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STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 3 OF 4) THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II.
Sequence Clustering and Redundancy Reduction Results
2J02
Sequence Clusters for the Sequence Entities in PDB 2J02
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 265 27
95% 130 267 47
90% 130 267 49
70% 130 267 59
50% 177 384 34
40% 177 384 46
30% 177 389 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 268 25
95% 130 268 43
90% 130 268 45
70% 130 268 55
50% 171 378 41
40% 209 454 34
30% 209 454 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 237 35
95% 130 275 35
90% 130 275 37
70% 171 390 24
50% 171 390 33
40% 171 390 45
30% 171 390 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 269 22
95% 130 269 41
90% 130 269 43
70% 130 269 53
50% 171 380 38
40% 171 380 51
30% 207 452 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 267 26
95% 130 267 48
90% 130 267 50
70% 130 267 60
50% 130 267 93
40% 130 267 119
30% 130 267 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 271 20
95% 134 276 32
90% 134 276 34
70% 134 276 47
50% 178 391 32
40% 178 391 43
30% 178 391 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 263 28
95% 130 268 45
90% 130 268 47
70% 130 268 57
50% 130 268 91
40% 130 268 117
30% 171 378 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 170 54
95% 129 262 49
90% 130 266 51
70% 130 266 61
50% 130 266 94
40% 130 266 120
30% 130 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 183 48
95% 124 232 61
90% 124 232 64
70% 124 232 78
50% 124 232 115
40% 124 232 139
30% 124 232 160
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 234 37
95% 124 234 59
90% 124 234 63
70% 124 234 77
50% 172 381 37
40% 172 381 49
30% 172 381 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 268 23
95% 130 269 38
90% 130 269 41
70% 130 269 51
50% 130 269 90
40% 171 378 53
30% 171 378 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 206 42
95% 130 267 46
90% 130 267 48
70% 130 267 58
50% 130 267 92
40% 130 267 118
30% 130 267 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 249 34
95% 130 249 53
90% 130 249 55
70% 130 249 67
50% 130 249 104
40% 130 249 132
30% 130 249 151
Entity #22: Chains: V - P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W,Y - E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - MRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 230 38
95% 123 230 63
90% 123 230 66
70% 123 230 80
50% 138 293 73
40% 138 293 99
30% 138 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 261 29
95% 130 269 39
90% 130 269 42
70% 130 269 52
50% 171 378 39
40% 171 379 52
30% 171 379 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 268 24
95% 130 268 42
90% 130 268 44
70% 130 268 54
50% 172 382 36
40% 172 382 48
30% 172 384 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 273 18
95% 138 279 29
90% 138 279 30
70% 138 279 44
50% 138 279 84
40% 138 279 106
30% 166 328 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 272 19
95% 131 273 36
90% 131 273 38
70% 131 273 49
50% 159 323 56
40% 159 324 73
30% 159 324 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 268 21
95% 130 268 40
90% 131 272 39
70% 131 272 50
50% 174 384 35
40% 175 386 47
30% 212 459 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 113 150
95% 130 268 44
90% 130 268 46
70% 130 268 56
50% 171 378 40
40% 171 378 54
30% 207 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.