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STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 3 OF 4) THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II.
Sequence Clustering and Redundancy Reduction Results
2J02
Sequence Clusters for the Sequence Entities in PDB 2J02
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 252 29
95% 121 254 48
90% 121 254 51
70% 121 254 63
50% 166 369 34
40% 166 369 47
30% 166 374 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 255 27
95% 121 255 44
90% 121 255 47
70% 121 255 59
50% 160 363 42
40% 164 403 39
30% 164 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 224 37
95% 121 262 36
90% 121 262 38
70% 160 375 24
50% 160 375 33
40% 160 375 46
30% 160 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 256 24
95% 121 256 42
90% 121 256 45
70% 121 256 57
50% 160 365 39
40% 160 365 53
30% 162 401 55
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 254 28
95% 121 254 49
90% 121 254 52
70% 121 254 64
50% 121 254 97
40% 121 254 122
30% 121 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 258 21
95% 125 263 35
90% 125 263 37
70% 125 263 48
50% 167 376 32
40% 167 376 44
30% 167 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 250 30
95% 121 255 46
90% 121 255 49
70% 121 255 61
50% 121 255 95
40% 121 255 120
30% 160 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 157 62
95% 120 249 51
90% 121 253 53
70% 121 253 65
50% 121 253 98
40% 121 253 124
30% 121 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 172 49
95% 115 221 64
90% 115 221 68
70% 115 221 81
50% 115 221 116
40% 115 221 144
30% 115 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 223 38
95% 115 223 63
90% 115 223 67
70% 115 223 80
50% 161 366 38
40% 161 366 52
30% 161 366 74
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 255 25
95% 121 256 39
90% 121 256 43
70% 121 256 55
50% 121 256 94
40% 160 363 55
30% 160 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 193 43
95% 121 254 47
90% 121 254 50
70% 121 254 62
50% 121 254 96
40% 121 254 121
30% 121 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 238 34
95% 121 238 55
90% 121 238 59
70% 121 238 71
50% 121 238 110
40% 121 238 133
30% 121 238 153
Entity #22: Chains: V - P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W,Y - E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - MRNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 219 39
95% 114 219 66
90% 114 219 70
70% 114 219 83
50% 129 282 81
40% 129 282 101
30% 129 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 248 32
95% 121 256 40
90% 121 256 44
70% 121 256 56
50% 160 363 40
40% 160 364 54
30% 160 364 75
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 255 26
95% 121 255 43
90% 121 255 46
70% 121 255 58
50% 161 367 37
40% 161 367 51
30% 161 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 260 18
95% 129 266 34
90% 129 266 36
70% 129 266 47
50% 129 266 88
40% 129 266 110
30% 155 313 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 259 20
95% 122 260 37
90% 122 260 39
70% 122 260 50
50% 148 308 57
40% 148 309 73
30% 148 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 255 23
95% 121 255 41
90% 122 259 40
70% 122 259 52
50% 163 369 36
40% 164 371 48
30% 167 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 113 133
95% 121 255 45
90% 121 255 48
70% 121 255 60
50% 160 363 41
40% 160 363 56
30% 162 399 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.