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STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I.
Sequence Clustering and Redundancy Reduction Results
2J01
Sequence Clusters for the Sequence Entities in PDB 2J01
Entity #1: Chains: 0 - 50S RIBOSOMAL PROTEIN L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 136 96
95% 56 152 102
90% 56 152 110
70% 56 152 135
50% 97 288 67
40% 97 288 88
30% 97 288 108
Entity #10: Chains: A - 23S RIBOSOMAL RNA rna, length: 2787 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: B - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: C - 50S RIBOSOMAL PROTEIN L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 66 334
95% 23 90 301
90% 23 91 315
70% 23 91 338
50% 24 128 240
40% 24 128 269
30% 29 170 210
Entity #13: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 65
95% 55 151 108
90% 55 151 116
70% 57 173 114
50% 96 283 79
40% 96 283 100
30% 96 283 122
Entity #14: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 66
95% 55 151 110
90% 55 151 118
70% 55 151 144
50% 96 288 72
40% 96 288 93
30% 96 289 114
Entity #15: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 135 103
95% 55 151 109
90% 55 151 117
70% 55 151 143
50% 57 178 150
40% 57 178 178
30% 97 290 109
Entity #16: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 136 98
95% 56 152 105
90% 56 152 113
70% 58 174 113
50% 98 288 68
40% 98 288 89
30% 98 288 110
Entity #17: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 68
95% 55 151 111
90% 55 151 120
70% 55 151 145
50% 58 183 147
40% 97 292 85
30% 166 397 61
Entity #18: Chains: I - 50S RIBOSOMAL PROTEIN L9 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 100 199
95% 51 122 176
90% 51 122 186
70% 51 122 221
50% 51 127 255
40% 82 231 137
30% 82 231 158
Entity #19: Chains: N - 50S RIBOSOMAL PROTEIN L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 146 77
95% 55 146 125
90% 55 146 135
70% 55 146 158
50% 94 265 90
40% 94 265 114
30% 94 266 139
Entity #2: Chains: 1 - 50S RIBOSOMAL PROTEIN L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 126 114
95% 55 148 123
90% 55 148 132
70% 55 148 155
50% 55 148 202
40% 55 148 236
30% 55 148 252
Entity #20: Chains: O - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 132 108
95% 55 151 114
90% 55 151 123
70% 57 173 115
50% 97 296 62
40% 97 297 81
30% 166 402 56
Entity #21: Chains: P - 50S RIBOSOMAL PROTEIN L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 69
95% 55 151 112
90% 55 151 121
70% 55 151 146
50% 55 153 192
40% 96 285 95
30% 165 394 62
Entity #22: Chains: Q - 50S RIBOSOMAL PROTEIN L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 136 102
95% 55 152 106
90% 55 152 114
70% 57 177 111
50% 96 287 73
40% 96 287 94
30% 96 287 116
Entity #23: Chains: R - 50S RIBOSOMAL PROTEIN L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 156 53
95% 56 156 91
90% 56 156 99
70% 56 156 122
50% 97 287 64
40% 97 289 82
30% 97 291 102
Entity #24: Chains: S - 50S RIBOSOMAL PROTEIN L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 132 109
95% 55 132 159
90% 55 132 170
70% 55 132 200
50% 96 284 78
40% 96 284 99
30% 96 284 119
Entity #25: Chains: T - 50S RIBOSOMAL PROTEIN L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 135 104
95% 55 151 113
90% 55 151 122
70% 55 151 147
50% 55 151 196
40% 55 151 231
30% 55 151 245
Entity #26: Chains: U - 50S RIBOSOMAL PROTEIN L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 143 80
95% 55 151 115
90% 55 151 124
70% 55 151 148
50% 97 290 66
40% 97 291 84
30% 97 291 106
Entity #27: Chains: V - 50S RIBOSOMAL PROTEIN L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 71
95% 55 151 117
90% 55 151 126
70% 55 151 150
50% 57 179 148
40% 96 285 96
30% 96 285 118
Entity #28: Chains: W - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 158 60
95% 57 159 96
90% 57 159 104
70% 57 159 127
50% 96 270 87
40% 96 270 108
30% 96 272 130
Entity #29: Chains: X - 50S RIBOSOMAL PROTEIN L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 152 64
95% 55 152 107
90% 55 152 115
70% 55 152 141
50% 57 176 154
40% 96 291 87
30% 163 369 73
Entity #3: Chains: 2 - 50S RIBOSOMAL PROTEIN L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 139 97
95% 55 142 131
90% 55 142 144
70% 55 142 168
50% 55 142 212
40% 94 260 119
30% 96 284 120
Entity #30: Chains: Y - 50S RIBOSOMAL PROTEIN L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 70
95% 55 151 116
90% 55 151 125
70% 55 151 149
50% 55 153 193
40% 94 265 115
30% 94 267 137
Entity #31: Chains: Z - 50S RIBOSOMAL PROTEIN L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 67
95% 56 152 104
90% 56 152 112
70% 56 152 139
50% 56 152 191
40% 56 152 228
30% 56 152 240
Entity #32: Chains: 9 - 50S RIBOSOMAL PROTEIN L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 105 184
95% 31 105 262
90% 31 105 273
70% 33 131 206
50% 72 238 109
40% 72 238 132
30% 72 238 152
Entity #33: Chains: J - 50S RIBOSOMAL PROTEIN L10 protein, length: 173 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4050
95% 2 11 4643
90% 2 11 4671
70% 2 11 4607
50% 2 11 4416
40% 2 11 4152
30% 11 31 1370
Entity #34: Chains: K - 50S RIBOSOMAL PROTEIN L11 protein, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 35 581
95% 10 38 737
90% 10 38 763
70% 12 60 486
50% 52 196 127
40% 52 199 155
30% 52 201 179
Entity #35: Chains: L,M - 50S RIBOSOMAL PROTEIN L7 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 9956
95% 2 3 9746
90% 2 3 9609
70% 2 3 9109
50% 6 19 1152
40% 6 19 1187
30% 6 20 1086
Entity #4: Chains: 3 - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 158 58
95% 56 158 98
90% 56 158 106
70% 56 158 129
50% 56 158 176
40% 97 291 86
30% 97 291 107
Entity #5: Chains: 4 - 50S RIBOSOMAL PROTEIN L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 125 117
95% 55 125 171
90% 55 125 180
70% 55 125 216
50% 55 163 172
40% 55 163 206
30% 55 163 225
Entity #6: Chains: 5 - 50S RIBOSOMAL PROTEIN L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 135 105
95% 55 143 128
90% 55 143 140
70% 55 143 165
50% 57 175 161
40% 96 282 102
30% 96 282 124
Entity #7: Chains: 6 - 50S RIBOSOMAL PROTEIN L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 149 76
95% 55 149 122
90% 55 149 131
70% 55 149 153
50% 55 150 199
40% 96 280 104
30% 96 280 126
Entity #8: Chains: 7 - 50S RIBOSOMAL PROTEIN L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 73
95% 55 151 119
90% 55 151 128
70% 55 151 152
50% 55 151 197
40% 55 151 232
30% 55 151 246
Entity #9: Chains: 8 - 50S RIBOSOMAL PROTEIN L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 151 72
95% 55 151 118
90% 55 151 127
70% 55 151 151
50% 57 177 152
40% 57 177 182
30% 57 177 205
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.