Sequence Similarity Clusters for the Entities in PDB 2ITL

Entity #1 | Chains: W
24-nt PEN element of the SV40 DNA origin dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
24-nt PEN element of the SV40 DNA origin dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
large T antigen protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 12 2316
95 % 6 14 2577
90 % 6 14 2625
70 % 8 18 2035
50 % 8 18 2051
40 % 8 18 2050
30 % 8 18 1959

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.