POP-OUT | CLOSE

An Information Portal to 107754 Biological Macromolecular Structures

The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp)
Sequence Clustering and Redundancy Reduction Results
2ITL
Sequence Clusters for the Sequence Entities in PDB 2ITL
Entity #1: Chains: W - 24-nt PEN element of the SV40 DNA origin dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: C - 24-nt PEN element of the SV40 DNA origin dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A,B - large T antigen protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 2299
95% 5 13 2545
90% 5 13 2573
70% 7 16 2071
50% 7 16 2089
40% 7 16 2101
30% 7 16 1981
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.