Sequence Similarity Clusters for the Entities in PDB 2ITL

Entity #1 | Chains: W
24-nt PEN element of the SV40 DNA origin dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
24-nt PEN element of the SV40 DNA origin dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
large T antigen protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 12 2799
95 % 6 14 3082 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 6 14 3130
70 % 8 18 2458
50 % 8 18 2436
40 % 8 18 2403
30 % 8 18 2288

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures