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The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp)
Sequence Clustering and Redundancy Reduction Results
2ITL
Sequence Clusters for the Sequence Entities in PDB 2ITL
Entity #1: Chains: W - 24-nt PEN element of the SV40 DNA origin dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: C - 24-nt PEN element of the SV40 DNA origin dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A,B - large T antigen protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 11 2412
95% 5 13 2667
90% 5 13 2704
70% 7 16 2138
50% 7 16 2148
40% 7 16 2153
30% 7 16 2035
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.