Sequence Similarity Clusters for the Entities in PDB 2IFF

Entity #1 | Chains: L
IGG1 HYHEL-5 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28444
95 % 22 22 1655 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 148 148 140
70 % 2416 2416 1
50 % 4891 4892 1
40 % 4891 4892 1
30 % 5756 5759 1
Entity #2 | Chains: H
IGG1 HYHEL-5 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41583
95 % 3 3 23595 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 13 13 3273
70 % 2366 2366 2
50 % 4892 4892 1
40 % 4892 4892 1
30 % 5757 5759 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68053
95 % 709 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 725 736 5
70 % 945 956 7
50 % 953 964 8
40 % 987 998 11
30 % 987 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures