Sequence Similarity Clusters for the Entities in PDB 2IFF

Entity #1 | Chains: L
IGG1 HYHEL-5 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28846
95 % 22 22 1677 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 148 148 144
70 % 2474 2474 1
50 % 5010 5011 1
40 % 5010 5011 1
30 % 5938 5941 1
Entity #2 | Chains: H
IGG1 HYHEL-5 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42146
95 % 3 3 23924 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 13 13 3318
70 % 2424 2424 2
50 % 5011 5011 1
40 % 5011 5011 1
30 % 5939 5941 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68919
95 % 711 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 727 738 5
70 % 950 961 7
50 % 958 969 8
40 % 992 1003 11
30 % 992 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures