Sequence Similarity Clusters for the Entities in PDB 2ICF

Entity #1 | Chains: A
Complement C3 beta chain protein, length: 642 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6844
95 % 19 24 1205 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 19 24 1232
70 % 19 24 1266
50 % 19 24 1318
40 % 22 27 1224
30 % 22 27 1200
Entity #2 | Chains: B
Complement C3 alpha chain protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3465
95 % 13 17 1923 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.0
PDBFlex
90 % 13 17 1968
70 % 13 17 1991
50 % 13 17 1994
40 % 13 17 1986
30 % 13 17 1919
Entity #3 | Chains: S
V-set and immunoglobulin domain-containing protein 4 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23367
95 % 3 3 20016 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 3 3 19467
70 % 6 6 9998
50 % 6 6 9049
40 % 6 6 8284
30 % 6 6 7301

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.