Sequence Similarity Clusters for the Entities in PDB 2ICF

Entity #1 | Chains: A
Complement C3 beta chain protein, length: 642 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7166
95 % 19 25 1244 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 19 25 1270
70 % 19 25 1301
50 % 19 25 1359
40 % 22 28 1247
30 % 22 28 1221
Entity #2 | Chains: B
Complement C3 alpha chain protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3653
95 % 13 18 1916 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.1
PDBFlex
90 % 13 18 1960
70 % 13 18 1976
50 % 13 18 1993
40 % 13 18 1990
30 % 13 18 1920
Entity #3 | Chains: S
V-set and immunoglobulin domain-containing protein 4 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 24437
95 % 3 3 20852 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 3 20261
70 % 6 6 10421
50 % 6 6 9432
40 % 6 6 8626
30 % 6 6 7590

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures