Sequence Similarity Clusters for the Entities in PDB 2ICF

Entity #1 | Chains: A
Complement C3 beta chain protein, length: 642 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7017
95 % 19 24 1236 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 19 24 1261
70 % 19 24 1292
50 % 19 24 1349
40 % 22 27 1249
30 % 22 27 1224
Entity #2 | Chains: B
Complement C3 alpha chain protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3564
95 % 13 17 1962 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.1
PDBFlex
90 % 13 17 2010
70 % 13 17 2037
50 % 13 17 2048
40 % 13 17 2038
30 % 13 17 1962
Entity #3 | Chains: S
V-set and immunoglobulin domain-containing protein 4 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23906
95 % 3 3 20441 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 3 19876
70 % 6 6 10193
50 % 6 6 9234
40 % 6 6 8447
30 % 6 6 7441

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures