Sequence Similarity Clusters for the Entities in PDB 2ICF

Entity #1 | Chains: A
Complement C3 beta chain protein, length: 642 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6610
95 % 17 22 1306 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 17 22 1330
70 % 17 22 1353
50 % 17 22 1398
40 % 20 25 1280
30 % 20 25 1257
Entity #2 | Chains: B
Complement C3 alpha chain protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 4219
95 % 11 15 2113 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 6.8
PDBFlex
90 % 11 15 2170
70 % 11 15 2176
50 % 11 15 2153
40 % 11 15 2150
30 % 11 15 2054
Entity #3 | Chains: S
V-set and immunoglobulin domain-containing protein 4 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22629
95 % 3 3 19366 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 3 18842
70 % 6 6 9649
50 % 6 6 8760
40 % 6 6 8026
30 % 6 6 7068

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.