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Crystal structure of [Phe23]M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I60
Sequence Clusters for the Sequence Entities in PDB 2I60
Entity #1: Chains: G,P - EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4144
95% 3 7 4736
90% 3 10 3041
70% 12 29 1074
50% 12 29 1140
40% 12 29 1161
30% 12 31 1061
Entity #2: Chains: L,Q - ANTIBODY 17B LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 18 1492
95% 11 21 1652
90% 166 376 5
70% 638 1330 3
50% 1534 3162 1
40% 1535 3163 1
30% 1732 3739 1
Entity #3: Chains: H,R - ANTIBODY 17B HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 18 1491
95% 11 21 1650
90% 11 21 1695
70% 745 1524 2
50% 1535 3162 1
40% 1536 3163 1
30% 1733 3739 1
Entity #4: Chains: M,S - [PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18875
95% 7 9 2125
90% 7 9 2155
70% 8 12 1671
50% 8 12 1713
40% 8 12 1743
30% 8 12 1675
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.