Sequence Similarity Clusters for the Entities in PDB 2I60

Entity #1 | Chains: G,P
EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 2573
95 % 3 9 3265
90 % 3 12 2422
70 % 54 121 166
50 % 54 121 198
40 % 54 121 214
30 % 54 124 223
Entity #2 | Chains: L,Q
ANTIBODY 17B LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 1221
95 % 11 23 1491
90 % 220 503 3
70 % 770 1617 3
50 % 1894 3934 1
40 % 1895 3935 1
30 % 2161 4663 1
Entity #3 | Chains: H,R
ANTIBODY 17B HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 1219
95 % 11 23 1487
90 % 11 23 1518
70 % 924 1909 1
50 % 1895 3934 1
40 % 1896 3935 1
30 % 2162 4663 1
Entity #4 | Chains: M,S
[PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12557
95 % 7 12 1953
90 % 7 12 2003
70 % 8 15 1619
50 % 8 15 1673
40 % 8 15 1697
30 % 8 15 1647

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.