Sequence Similarity Clusters for the Entities in PDB 2I60

Entity #1 | Chains: G,P
EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 2812
95 % 3 9 3529
90 % 3 12 2694
70 % 56 126 179
50 % 56 126 216
40 % 56 126 238
30 % 56 129 241
Entity #2 | Chains: L,Q
ANTIBODY 17B LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 21 1195
95 % 11 24 1473
90 % 298 644 3
70 % 853 1775 2
50 % 2123 4367 1
40 % 2123 4367 1
30 % 2416 5151 1
Entity #3 | Chains: H,R
ANTIBODY 17B HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 21 1193
95 % 11 24 1471
90 % 11 24 1494
70 % 1030 2111 1
50 % 2124 4367 1
40 % 2124 4367 1
30 % 2417 5151 1
Entity #4 | Chains: M,S
[PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13541
95 % 7 12 2165
90 % 7 12 2233
70 % 8 15 1788
50 % 8 15 1810
40 % 8 15 1821
30 % 8 15 1763

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.