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Crystal structure of [Phe23]M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I60
Sequence Clusters for the Sequence Entities in PDB 2I60
Entity #1: Chains: G,P - EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 4473
95% 3 6 5073
90% 3 9 3239
70% 12 28 1083
50% 12 28 1150
40% 12 28 1171
30% 12 30 1091
Entity #2: Chains: L,Q - ANTIBODY 17B LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 17 1538
95% 11 20 1684
90% 166 370 5
70% 631 1303 3
50% 1520 3106 1
40% 1521 3107 1
30% 1718 3679 1
Entity #3: Chains: H,R - ANTIBODY 17B HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 17 1534
95% 11 20 1680
90% 11 20 1727
70% 739 1498 2
50% 1521 3106 1
40% 1522 3107 1
30% 1719 3679 1
Entity #4: Chains: M,S - [PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18623
95% 7 9 2096
90% 7 9 2126
70% 8 12 1648
50% 8 12 1687
40% 8 12 1719
30% 8 12 1658
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.