Sequence Similarity Clusters for the Entities in PDB 2I60

Entity #1 | Chains: G,P
EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 2451
95 % 3 9 3122
90 % 3 12 2303
70 % 12 31 1013
50 % 12 31 1063
40 % 12 31 1088
30 % 51 111 242
Entity #2 | Chains: L,Q
ANTIBODY 17B LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 1178
95 % 11 23 1437
90 % 202 461 4
70 % 724 1526 3
50 % 1780 3692 1
40 % 1781 3693 1
30 % 2006 4355 1
Entity #3 | Chains: H,R
ANTIBODY 17B HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 1176
95 % 11 23 1432
90 % 11 23 1458
70 % 868 1790 1
50 % 1781 3692 1
40 % 1782 3693 1
30 % 2007 4355 1
Entity #4 | Chains: M,S
[PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 11954
95 % 7 11 1936
90 % 7 11 1985
70 % 8 14 1648
50 % 8 14 1692
40 % 8 14 1709
30 % 8 14 1628

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.