Sequence Similarity Clusters for the Entities in PDB 2I60

Entity #1 | Chains: G,P
EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 2933
95 % 3 9 3659
90 % 3 12 2783
70 % 56 126 178
50 % 56 126 221
40 % 56 126 240
30 % 56 129 248
Entity #2 | Chains: L,Q
ANTIBODY 17B LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 21 1264
95 % 13 32 1110
90 % 322 697 3
70 % 1083 2280 1
50 % 2217 4619 1
40 % 2217 4619 1
30 % 2526 5440 1
Entity #3 | Chains: H,R
ANTIBODY 17B HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 21 1262
95 % 11 25 1390
90 % 11 25 1413
70 % 1077 2238 2
50 % 2218 4619 1
40 % 2218 4619 1
30 % 2527 5440 1
Entity #4 | Chains: M,S
[PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14098
95 % 7 12 2261
90 % 7 12 2327
70 % 8 15 1857
50 % 8 15 1878
40 % 8 15 1881
30 % 8 15 1821

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.