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An Information Portal to 108263 Biological Macromolecular Structures

Crystal structure of [Phe23]M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I60
Sequence Clusters for the Sequence Entities in PDB 2I60
Entity #1: Chains: G,P - EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4281
95% 3 7 4880
90% 3 10 3127
70% 12 29 1100
50% 12 29 1159
40% 12 29 1184
30% 12 31 1078
Entity #2: Chains: L,Q - ANTIBODY 17B LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 18 1539
95% 11 21 1691
90% 173 389 5
70% 651 1361 3
50% 1572 3242 1
40% 1573 3243 1
30% 1772 3827 1
Entity #3: Chains: H,R - ANTIBODY 17B HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 18 1538
95% 11 21 1689
90% 11 21 1737
70% 764 1564 2
50% 1573 3242 1
40% 1574 3243 1
30% 1773 3827 1
Entity #4: Chains: M,S - [PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 19311
95% 7 9 2180
90% 7 9 2208
70% 8 12 1708
50% 8 12 1754
40% 8 12 1781
30% 8 12 1704
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.