Sequence Similarity Clusters for the Entities in PDB 2I60

Entity #1 | Chains: G,P
EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 2774
95 % 3 9 3480
90 % 3 12 2641
70 % 55 125 172
50 % 55 125 211
40 % 55 125 234
30 % 55 128 239
Entity #2 | Chains: L,Q
ANTIBODY 17B LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 21 1166
95 % 11 24 1442
90 % 292 632 3
70 % 842 1752 2
50 % 2072 4272 1
40 % 2072 4272 1
30 % 2357 5038 1
Entity #3 | Chains: H,R
ANTIBODY 17B HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 21 1164
95 % 11 24 1440
90 % 11 24 1466
70 % 1006 2066 1
50 % 2073 4272 1
40 % 2073 4272 1
30 % 2358 5038 1
Entity #4 | Chains: M,S
[PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13339
95 % 7 12 2129
90 % 7 12 2195
70 % 8 15 1758
50 % 8 15 1784
40 % 8 15 1796
30 % 8 15 1738

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.