POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

Crystal structure of [Phe23]M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I60
Sequence Clusters for the Sequence Entities in PDB 2I60
Entity #1: Chains: G,P - EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 7 4319
95% 3 7 4936
90% 3 10 3141
70% 12 29 1106
50% 12 29 1163
40% 12 29 1190
30% 12 31 1086
Entity #2: Chains: L,Q - ANTIBODY 17B LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 18 1544
95% 11 21 1701
90% 180 412 4
70% 656 1386 3
50% 1581 3291 1
40% 1582 3292 1
30% 1783 3880 1
Entity #3: Chains: H,R - ANTIBODY 17B HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 18 1543
95% 11 21 1699
90% 11 21 1746
70% 768 1588 2
50% 1582 3291 1
40% 1583 3292 1
30% 1784 3880 1
Entity #4: Chains: M,S - [PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 19431
95% 7 9 2192
90% 7 9 2218
70% 8 12 1716
50% 8 12 1757
40% 8 12 1788
30% 8 12 1708
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.