Sequence Similarity Clusters for the Entities in PDB 2I60

Entity #1 | Chains: G,P
EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 2854
95 % 3 9 3577 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 12 2729
70 % 56 126 179
50 % 56 126 218
40 % 56 126 240
30 % 56 129 245
Entity #2 | Chains: L,Q
ANTIBODY 17B LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 21 1218
95 % 11 24 1484 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.7
PDBFlex
90 % 314 676 3
70 % 873 1822 2
50 % 2169 4489 1
40 % 2169 4489 1
30 % 2468 5290 1
Entity #3 | Chains: H,R
ANTIBODY 17B HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 21 1216
95 % 11 24 1482 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 11 24 1509
70 % 1053 2172 1
50 % 2170 4489 1
40 % 2170 4489 1
30 % 2469 5290 1
Entity #4 | Chains: M,S
[PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13761
95 % 7 12 2197 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 7 12 2267
70 % 8 15 1807
50 % 8 15 1829
40 % 8 15 1837
30 % 8 15 1779

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.