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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I5Y
Sequence Clusters for the Sequence Entities in PDB 2I5Y
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4156
95% 2 7 4748
90% 2 10 3049
70% 9 29 1075
50% 9 29 1140
40% 9 29 1161
30% 9 31 1061
Entity #2: Chains: L,Q - Antibody 17B Light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1495
95% 9 21 1655
90% 124 377 5
70% 496 1332 3
50% 1194 3170 1
40% 1195 3171 1
30% 1330 3753 1
Entity #3: Chains: H,R - Antibody 17B Heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1494
95% 9 21 1653
90% 9 21 1698
70% 579 1528 2
50% 1195 3170 1
40% 1196 3171 1
30% 1331 3753 1
Entity #4: Chains: M,S - CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18924
95% 6 9 2128
90% 6 9 2158
70% 7 12 1673
50% 7 12 1714
40% 7 12 1746
30% 7 12 1677
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.