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Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I5Y
Sequence Clusters for the Sequence Entities in PDB 2I5Y
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4369
95% 2 7 4983
90% 2 10 3177
70% 9 29 1113
50% 9 29 1176
40% 9 29 1201
30% 9 31 1095
Entity #2: Chains: L,Q - Antibody 17B Light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1557
95% 9 21 1724
90% 138 418 4
70% 524 1412 3
50% 1263 3355 1
40% 1264 3356 1
30% 1403 3971 1
Entity #3: Chains: H,R - Antibody 17B Heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1555
95% 9 21 1722
90% 9 21 1768
70% 614 1622 2
50% 1264 3355 1
40% 1265 3356 1
30% 1404 3971 1
Entity #4: Chains: M,S - CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19636
95% 6 9 2219
90% 6 9 2246
70% 7 12 1741
50% 7 12 1779
40% 7 12 1806
30% 7 12 1723
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.