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Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I5Y
Sequence Clusters for the Sequence Entities in PDB 2I5Y
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4408
95% 2 7 5019
90% 2 10 3202
70% 9 29 1119
50% 9 29 1187
40% 9 29 1214
30% 9 31 1105
Entity #2: Chains: L,Q - Antibody 17B Light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1570
95% 9 21 1744
90% 140 425 4
70% 533 1434 3
50% 1289 3425 1
40% 1290 3426 1
30% 1430 4043 1
Entity #3: Chains: H,R - Antibody 17B Heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1568
95% 9 21 1741
90% 9 21 1786
70% 627 1656 1
50% 1290 3425 1
40% 1291 3426 1
30% 1431 4043 1
Entity #4: Chains: M,S - CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 11349
95% 6 11 1833
90% 6 11 1879
70% 7 14 1561
50% 7 14 1609
40% 7 14 1639
30% 7 14 1566
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.