Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 2609
95 % 2 9 3289
90 % 2 12 2452
70 % 47 121 167
50 % 47 121 199
40 % 47 121 217
30 % 47 124 223
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 1241
95 % 9 23 1515
90 % 170 518 3
70 % 611 1639 3
50 % 1498 3985 1
40 % 1499 3986 1
30 % 1677 4715 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 1239
95 % 9 23 1511
90 % 9 23 1543
70 % 727 1932 1
50 % 1499 3985 1
40 % 1500 3986 1
30 % 1678 4715 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 12685
95 % 6 12 1976
90 % 6 12 2028
70 % 7 15 1645
50 % 7 15 1688
40 % 7 15 1707
30 % 7 15 1659

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.