POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I5Y
Sequence Clusters for the Sequence Entities in PDB 2I5Y
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 4516
95% 2 6 5121
90% 2 9 3269
70% 9 28 1097
50% 9 28 1169
40% 9 28 1188
30% 9 30 1107
Entity #2: Chains: L,Q - Antibody 17B Light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 17 1549
95% 9 20 1698
90% 124 374 5
70% 492 1320 3
50% 1186 3142 1
40% 1187 3143 1
30% 1320 3719 1
Entity #3: Chains: H,R - Antibody 17B Heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 17 1545
95% 9 20 1694
90% 9 20 1741
70% 575 1514 2
50% 1187 3142 1
40% 1188 3143 1
30% 1321 3719 1
Entity #4: Chains: M,S - CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18777
95% 6 9 2113
90% 6 9 2141
70% 7 12 1664
50% 7 12 1703
40% 7 12 1734
30% 7 12 1666
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.