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Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I5Y
Sequence Clusters for the Sequence Entities in PDB 2I5Y
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 4370
95% 2 6 4970
90% 2 9 3126
70% 9 27 1155
50% 9 27 1218
40% 9 27 1253
30% 9 29 1153
Entity #2: Chains: L,Q - Antibody 17B Light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 17 1434
95% 9 20 1583
90% 121 365 4
70% 485 1291 3
50% 1172 3070 1
40% 1173 3071 1
30% 1302 3629 1
Entity #3: Chains: H,R - Antibody 17B Heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 17 1431
95% 9 20 1579
90% 9 20 1627
70% 568 1480 2
50% 1173 3070 1
40% 1174 3071 1
30% 1303 3629 1
Entity #4: Chains: M,S - CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18301
95% 6 8 3510
90% 6 8 3543
70% 7 11 2401
50% 7 11 2433
40% 7 11 2423
30% 7 11 2273
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.