Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 2861
95 % 2 9 3584 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 2 12 2731
70 % 49 126 179
50 % 49 126 219
40 % 49 126 241
30 % 49 129 246
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 21 1224
95 % 9 24 1485 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.7
PDBFlex
90 % 241 676 3
70 % 679 1828 2
50 % 1685 4501 1
40 % 1685 4501 1
30 % 1894 5303 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 21 1222
95 % 9 24 1483 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.8
PDBFlex
90 % 9 24 1510
70 % 813 2178 1
50 % 1686 4501 1
40 % 1686 4501 1
30 % 1895 5303 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13796
95 % 6 12 2199 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 6 12 2269
70 % 7 15 1811
50 % 7 15 1831
40 % 7 15 1840
30 % 7 15 1782

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.