Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 2751
95 % 2 9 3461
90 % 2 12 2614
70 % 48 125 171
50 % 48 125 206
40 % 48 125 230
30 % 48 128 232
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 1146
95 % 9 24 1426
90 % 223 624 3
70 % 643 1729 2
50 % 1586 4220 1
40 % 1586 4221 1
30 % 1770 4972 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 1144
95 % 9 24 1424
90 % 9 24 1450
70 % 765 2041 1
50 % 1587 4220 1
40 % 1587 4221 1
30 % 1771 4972 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13248
95 % 6 12 2115
90 % 6 12 2180
70 % 7 15 1728
50 % 7 15 1768
40 % 7 15 1781
30 % 7 15 1724

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.