Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 2850
95 % 2 10 3545 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 2 13 2750
70 % 49 129 182
50 % 49 129 223
40 % 49 129 241
30 % 49 132 248
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 21 1315
95 % 11 32 1148 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.8
PDBFlex
90 % 272 746 3
70 % 886 2392 1
50 % 1811 4843 1
40 % 1811 4843 1
30 % 2041 5705 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 21 1313
95 % 9 25 1428 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 9 25 1456
70 % 872 2342 2
50 % 1812 4843 1
40 % 1812 4843 1
30 % 2042 5705 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14541
95 % 6 13 2180 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 6 13 2232
70 % 7 16 1763
50 % 7 16 1806
40 % 7 16 1814
30 % 7 16 1753

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures