Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 2579
95 % 2 9 3274
90 % 2 12 2426
70 % 47 121 166
50 % 47 121 198
40 % 47 121 214
30 % 47 124 223
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 1223
95 % 9 23 1496
90 % 167 505 3
70 % 602 1620 3
50 % 1476 3940 1
40 % 1477 3941 1
30 % 1654 4669 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 1221
95 % 9 23 1492
90 % 9 23 1523
70 % 718 1912 1
50 % 1477 3940 1
40 % 1478 3941 1
30 % 1655 4669 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 12594
95 % 6 12 1955
90 % 6 12 2006
70 % 7 15 1622
50 % 7 15 1675
40 % 7 15 1699
30 % 7 15 1649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.