Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 2914
95 % 2 10 3623 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 2 13 2816
70 % 49 130 185
50 % 49 130 226
40 % 49 130 243
30 % 49 133 251
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 21 1356
95 % 11 32 1176 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.8
PDBFlex
90 % 295 791 2
70 % 929 2479 1
50 % 1898 5021 1
40 % 1898 5021 1
30 % 2170 5951 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 21 1354
95 % 9 25 1468 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 9 25 1494
70 % 915 2429 2
50 % 1899 5021 1
40 % 1899 5021 1
30 % 2171 5951 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14903
95 % 6 13 2242 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 6 13 2299
70 % 7 16 1822
50 % 7 16 1858
40 % 7 16 1860
30 % 7 16 1799

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures