Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 2560
95 % 2 9 3252
90 % 2 12 2409
70 % 47 120 166
50 % 47 120 198
40 % 47 120 214
30 % 47 123 222
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 1215
95 % 9 23 1486
90 % 166 502 3
70 % 599 1611 3
50 % 1466 3908 1
40 % 1467 3909 1
30 % 1644 4637 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 1213
95 % 9 23 1482
90 % 9 23 1513
70 % 713 1896 1
50 % 1467 3908 1
40 % 1468 3909 1
30 % 1645 4637 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 12483
95 % 6 11 2012
90 % 6 11 2059
70 % 7 14 1710
50 % 7 14 1747
40 % 7 14 1765
30 % 7 14 1699

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.