Sequence Similarity Clusters for the Entities in PDB 2I5Y

Entity #1 | Chains: G,P
Exterior membrane glycoprotein(GP120) protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 2837
95 % 2 9 3556
90 % 2 12 2710
70 % 49 126 179
50 % 49 126 218
40 % 49 126 239
30 % 49 129 243
Entity #2 | Chains: L,Q
Antibody 17B Light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 1203
95 % 9 24 1475
90 % 238 665 3
70 % 669 1803 2
50 % 1664 4435 1
40 % 1664 4435 1
30 % 1871 5225 1
Entity #3 | Chains: H,R
Antibody 17B Heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 21 1201
95 % 9 24 1473
90 % 9 24 1500
70 % 803 2145 1
50 % 1665 4435 1
40 % 1665 4435 1
30 % 1872 5225 1
Entity #4 | Chains: M,S
CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13642
95 % 6 12 2180
90 % 6 12 2249
70 % 7 15 1796
50 % 7 15 1822
40 % 7 15 1830
30 % 7 15 1768

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.