POP-OUT | CLOSE

An Information Portal to 109274 Biological Macromolecular Structures

Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B
Sequence Clustering and Redundancy Reduction Results
2I5Y
Sequence Clusters for the Sequence Entities in PDB 2I5Y
Entity #1: Chains: G,P - Exterior membrane glycoprotein(GP120) protein, length: 313 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 7 4332
95% 2 7 4951
90% 2 10 3152
70% 9 29 1109
50% 9 29 1168
40% 9 29 1193
30% 9 31 1090
Entity #2: Chains: L,Q - Antibody 17B Light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1549
95% 9 21 1704
90% 136 413 4
70% 512 1391 3
50% 1237 3311 1
40% 1238 3312 1
30% 1375 3921 1
Entity #3: Chains: H,R - Antibody 17B Heavy chain protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 18 1548
95% 9 21 1702
90% 9 21 1749
70% 598 1595 2
50% 1238 3311 1
40% 1239 3312 1
30% 1376 3921 1
Entity #4: Chains: M,S - CD4M47, SCORPION-TOXIN MIMIC OF CD4 protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19491
95% 6 9 2200
90% 6 9 2226
70% 7 12 1720
50% 7 12 1764
40% 7 12 1794
30% 7 12 1714
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.