Sequence Similarity Clusters for the Entities in PDB 2HMI

Entity #1 | Chains: E
DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 83 107 254
95 % 219 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 219 258 119
70 % 219 258 133
50 % 220 259 161
40 % 221 260 172
30 % 221 260 190
Entity #4 | Chains: B
HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 118 219
95 % 214 252 120 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 214 252 123
70 % 214 252 140
50 % 216 254 169
40 % 216 254 182
30 % 216 254 201
Entity #5 | Chains: C
FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26569
95 % 1 3 23399 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 56 68 401
70 % 2117 2553 1
50 % 4303 5180 1
40 % 4831 5834 1
30 % 6036 7269 1
Entity #6 | Chains: D
FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26568
95 % 3 8 9170 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 3 8 9075
70 % 2084 2511 2
50 % 4304 5180 1
40 % 4832 5834 1
30 % 6037 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures