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An Information Portal to 109093 Biological Macromolecular Structures

HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX
Sequence Clustering and Redundancy Reduction Results
2HMI
Sequence Clusters for the Sequence Entities in PDB 2HMI
Entity #1: Chains: E - DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 558 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 17 2245
95% 173 208 78
90% 173 208 81
70% 173 208 96
50% 174 209 132
40% 174 209 151
30% 174 209 167
Entity #4: Chains: B - HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 430 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 73 238
95% 168 202 83
90% 168 202 87
70% 168 202 103
50% 169 203 137
40% 169 203 157
30% 169 203 177
Entity #5: Chains: C - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 32272
95% 1 3 18317
90% 38 48 485
70% 1211 1388 3
50% 2874 3295 1
40% 2875 3296 1
30% 3387 3893 1
Entity #6: Chains: D - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21676
95% 3 8 7263
90% 3 8 7210
70% 1386 1590 2
50% 2875 3295 1
40% 2876 3296 1
30% 3388 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.