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An Information Portal to 107049 Biological Macromolecular Structures

HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX
Sequence Clustering and Redundancy Reduction Results
2HMI
Sequence Clusters for the Sequence Entities in PDB 2HMI
Entity #1: Chains: E - DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 558 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 17 2204
95% 167 202 77
90% 167 202 81
70% 167 202 96
50% 168 203 132
40% 168 203 150
30% 168 203 170
Entity #4: Chains: B - HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 430 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 67 254
95% 162 196 83
90% 162 196 87
70% 162 196 103
50% 163 197 136
40% 163 197 158
30% 163 197 180
Entity #5: Chains: C - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31632
95% 1 3 18008
90% 35 45 531
70% 1178 1339 3
50% 2799 3188 1
40% 2800 3189 1
30% 3301 3771 1
Entity #6: Chains: D - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21281
95% 3 8 7119
90% 3 8 7070
70% 1349 1537 2
50% 2800 3188 1
40% 2801 3189 1
30% 3302 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.