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HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX
Sequence Clustering and Redundancy Reduction Results
2HMI
Sequence Clusters for the Sequence Entities in PDB 2HMI
Entity #1: Chains: E - DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 558 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 17 2340
95% 175 210 78
90% 175 210 82
70% 175 210 104
50% 176 211 142
40% 176 211 155
30% 176 211 171
Entity #4: Chains: B - HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 430 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 74 241
95% 170 204 87
90% 170 204 92
70% 170 204 113
50% 171 205 148
40% 171 205 162
30% 171 205 181
Entity #5: Chains: C - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 33205
95% 1 3 18874
90% 47 58 389
70% 1261 1454 3
50% 3015 3477 1
40% 3016 3478 1
30% 3556 4103 1
Entity #6: Chains: D - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22333
95% 3 8 7470
90% 3 8 7411
70% 1458 1682 1
50% 3016 3477 1
40% 3017 3478 1
30% 3557 4103 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.