Sequence Similarity Clusters for the Entities in PDB 2HMI

Entity #1 | Chains: E
DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 24 1100
95 % 185 223 104
90 % 185 223 109
70 % 185 223 123
50 % 186 224 149
40 % 186 224 165
30 % 186 224 181
Entity #4 | Chains: B
HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 85 214
95 % 180 217 109
90 % 180 217 114
70 % 180 217 130
50 % 181 218 156
40 % 181 218 172
30 % 181 218 187
Entity #5 | Chains: C
FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 35848
95 % 1 3 20307
90 % 51 63 348
70 % 1393 1609 3
50 % 3362 3902 1
40 % 3363 3903 1
30 % 3996 4631 1
Entity #6 | Chains: D
FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24105
95 % 3 8 8047
90 % 3 8 7984
70 % 1631 1894 1
50 % 3363 3902 1
40 % 3364 3903 1
30 % 3997 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.