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An Information Portal to 106082 Biological Macromolecular Structures

HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX
Sequence Clustering and Redundancy Reduction Results
2HMI
Sequence Clusters for the Sequence Entities in PDB 2HMI
Entity #1: Chains: E - DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 558 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 17 2173
95% 167 202 63
90% 167 202 66
70% 167 202 83
50% 168 203 118
40% 168 203 141
30% 168 203 164
Entity #4: Chains: B - HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 430 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 67 252
95% 162 196 69
90% 162 196 73
70% 162 196 90
50% 163 197 121
40% 163 197 148
30% 163 197 175
Entity #5: Chains: C - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31338
95% 1 3 17860
90% 35 45 527
70% 1173 1332 3
50% 2785 3170 1
40% 2786 3171 1
30% 3287 3753 1
Entity #6: Chains: D - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21068
95% 3 8 7060
90% 3 8 7013
70% 1342 1528 2
50% 2786 3170 1
40% 2787 3171 1
30% 3288 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.