POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX
Sequence Clustering and Redundancy Reduction Results
2HMI
Sequence Clusters for the Sequence Entities in PDB 2HMI
Entity #1: Chains: E - DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - SUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 558 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 17 2136
95% 166 201 62
90% 166 201 65
70% 166 201 79
50% 167 202 117
40% 167 202 140
30% 167 202 162
Entity #4: Chains: B - HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE protein, length: 430 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 66 256
95% 161 195 69
90% 161 195 73
70% 161 195 89
50% 162 196 119
40% 162 196 147
30% 162 196 173
Entity #5: Chains: C - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30778
95% 1 3 17571
90% 33 43 566
70% 1147 1301 3
50% 2731 3102 1
40% 2732 3103 1
30% 3219 3671 1
Entity #6: Chains: D - FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 20697
95% 3 8 6928
90% 3 8 6880
70% 1317 1496 2
50% 2732 3102 1
40% 2733 3103 1
30% 3220 3671 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.