Sequence Similarity Clusters for the Entities in PDB 2HCD

Entity #1 | Chains: A
Vitamin D receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 28 1603
95 % 24 31 1880 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 24 31 1920
70 % 24 31 1937
50 % 24 31 1962
40 % 24 31 1964
30 % 36 53 930
Entity #2 | Chains: B
SRC-1 from Nuclear receptor coactivator 1 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures