Sequence Similarity Clusters for the Entities in PDB 2HCD

Entity #1 | Chains: A
Vitamin D receptor protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 1805
95 % 20 27 2075 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 20 27 2128
70 % 20 27 2131
50 % 20 27 2115
40 % 20 27 2108
30 % 30 47 980
Entity #2 | Chains: B
SRC-1 from Nuclear receptor coactivator 1 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.