Sequence Similarity Clusters for the Entities in PDB 2H4M

Entity #1 | Chains: A,B
Transportin-1 protein, length: 865 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31670
95 % 8 15 2998 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.9
PDBFlex
90 % 8 15 3039
70 % 8 15 3001
50 % 8 15 2955
40 % 8 15 2899
30 % 8 15 2716
Entity #2 | Chains: C,D
Heterogeneous nuclear ribonucleoprotein A1 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50608
95 % 1 1 37762 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 36021
70 % 1 1 31996
50 % 1 1 27322
40 % 1 1 24131
30 % 1 1 20484

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures