Sequence Similarity Clusters for the Entities in PDB 2H4M

Entity #1 | Chains: A,B
Transportin-1 protein, length: 865 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29846
95 % 8 15 2820 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.9
PDBFlex
90 % 8 15 2863
70 % 8 15 2832
50 % 8 15 2797
40 % 8 15 2754
30 % 8 15 2576
Entity #2 | Chains: C,D
Heterogeneous nuclear ribonucleoprotein A1 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47991
95 % 1 1 35869 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 34280
70 % 1 1 30574
50 % 1 1 26184
40 % 1 1 23130
30 % 1 1 19641

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.