Sequence Similarity Clusters for the Entities in PDB 2FWO

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-D alpha chain protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 15246
95 % 11 11 3562
90 % 11 11 3606
70 % 650 727 6
50 % 652 732 6
40 % 693 783 10
30 % 773 907 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 112 135 96
95 % 181 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 181 228 67
70 % 796 922 4
50 % 810 944 3
40 % 810 944 7
30 % 810 944 12
Entity #3 | Chains: P
TYQRTRALV peptide from Nucleoprotein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures