Sequence Similarity Clusters for the Entities in PDB 2FWO

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-D alpha chain protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 16478
95 % 13 13 2579
90 % 13 13 2647
70 % 661 740 6
50 % 672 754 7
40 % 708 806 9
30 % 791 930 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 45 525
95 % 185 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 185 234 66
70 % 813 944 4
50 % 827 966 3
40 % 827 966 6
30 % 827 966 9
Entity #3 | Chains: P
TYQRTRALV peptide from Nucleoprotein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures