Sequence Similarity Clusters for the Entities in PDB 2FO1

Entity #1 | Chains: B
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Lin-12 and glp-1 phenotype protein 1, isoform b protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17549
95 % 4 4 16050 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 4 4 15754
70 % 4 4 14752
50 % 10 12 4163
40 % 10 12 3985
30 % 10 12 3693
Entity #4 | Chains: D
Protein lag-3 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71904
95 % 1 1 49719
90 % 1 1 47138
70 % 1 1 41310
50 % 1 1 35224
40 % 1 1 31046
30 % 1 1 26189
Entity #5 | Chains: E
Lin-12 protein protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54598
95 % 1 1 39612
90 % 1 1 37831
70 % 1 1 33601
50 % 1 1 28739
40 % 1 1 25402
30 % 1 1 21632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures