Sequence Similarity Clusters for the Entities in PDB 2FO1

Entity #1 | Chains: B
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Lin-12 and glp-1 phenotype protein 1, isoform b protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17098
95 % 4 4 15685 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 2.1
PDBFlex
90 % 4 4 15388
70 % 4 4 14414
50 % 10 12 4074
40 % 10 12 3903
30 % 10 12 3619
Entity #4 | Chains: D
Protein lag-3 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70389
95 % 1 1 48735
90 % 1 1 46253
70 % 1 1 40594
50 % 1 1 34621
40 % 1 1 30521
30 % 1 1 25738
Entity #5 | Chains: E
Lin-12 protein protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53383
95 % 1 1 38749
90 % 1 1 37028
70 % 1 1 32940
50 % 1 1 28175
40 % 1 1 24911
30 % 1 1 21207

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.