Sequence Similarity Clusters for the Entities in PDB 2FO1

Entity #1 | Chains: B
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Lin-12 and glp-1 phenotype protein 1, isoform b protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 20045
95 % 4 4 18318 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 4 4 17842
70 % 4 4 16467
50 % 10 12 4669
40 % 10 12 4410
30 % 10 12 3965
Entity #4 | Chains: D
Protein lag-3 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61403
95 % 1 1 50134
90 % 1 1 47550
70 % 1 1 41643
50 % 1 1 35334
40 % 1 1 30948
30 % 1 1 25864
Entity #5 | Chains: E
Lin-12 protein protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54712
95 % 1 1 45040
90 % 1 1 42806
70 % 1 1 37688
50 % 1 1 36776
40 % 1 1 32206
30 % 1 1 26939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures