Sequence Similarity Clusters for the Entities in PDB 2FO1

Entity #1 | Chains: B
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Lin-12 and glp-1 phenotype protein 1, isoform b protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17323
95 % 4 4 15875 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 4 4 15578
70 % 4 4 14596
50 % 10 12 4126
40 % 10 12 3952
30 % 10 12 3662
Entity #4 | Chains: D
Protein lag-3 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71258
95 % 1 1 49304
90 % 1 1 46763
70 % 1 1 40998
50 % 1 1 34964
40 % 1 1 30821
30 % 1 1 26000
Entity #5 | Chains: E
Lin-12 protein protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54076
95 % 1 1 39249
90 % 1 1 37493
70 % 1 1 33317
50 % 1 1 28496
40 % 1 1 25190
30 % 1 1 21449

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.