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Crystal structure of Salinosporamide A in complex with the yeast 20S proteasome
Sequence Clustering and Redundancy Reduction Results
2FAK
Sequence Clusters for the Sequence Entities in PDB 2FAK
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 41
95% 108 125 61
90% 108 125 64
70% 108 125 77
50% 110 132 103
40% 442 545 6
30% 769 941 5
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 124 45
95% 107 124 67
90% 107 124 70
70% 107 124 83
50% 107 124 122
40% 109 131 128
30% 109 131 149
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 68 113
95% 104 118 74
90% 104 118 78
70% 104 118 95
50% 106 125 114
40% 106 125 137
30% 228 281 19
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 42
95% 108 125 62
90% 108 125 65
70% 108 125 78
50% 108 125 119
40% 110 132 125
30% 110 132 147
Entity #13: Chains: 1,M - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 36
95% 108 125 56
90% 108 125 60
70% 108 125 73
50% 108 125 118
40% 110 132 122
30% 110 132 146
Entity #14: Chains: 2,N - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 43
95% 108 125 64
90% 108 125 67
70% 108 125 80
50% 110 132 104
40% 110 132 126
30% 229 281 19
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 244 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 38
95% 108 125 58
90% 108 125 61
70% 108 125 74
50% 110 132 100
40% 443 545 6
30% 770 941 5
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 39
95% 108 125 59
90% 108 125 62
70% 108 125 75
50% 110 132 101
40% 444 545 6
30% 771 941 5
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 125 37
95% 107 125 57
90% 108 126 58
70% 108 126 72
50% 110 133 98
40% 445 545 6
30% 772 941 5
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 123 46
95% 108 125 63
90% 108 125 66
70% 108 125 79
50% 110 132 99
40% 110 132 123
30% 773 941 5
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 244 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 36 284
95% 30 36 405
90% 30 36 428
70% 30 36 459
50% 32 43 391
40% 32 43 413
30% 774 941 5
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 40
95% 108 125 60
90% 108 125 63
70% 108 125 76
50% 110 132 102
40% 110 132 124
30% 775 941 5
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 118 49
95% 104 118 73
90% 104 118 77
70% 104 118 94
50% 106 125 113
40% 106 125 136
30% 106 125 155
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 125 44
95% 108 125 65
90% 108 125 68
70% 108 125 81
50% 110 132 105
40% 110 132 127
30% 110 132 148
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.