Sequence Similarity Clusters for the Entities in PDB 2FAK

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 19
95 % 225 252 31 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.2
PDBFlex
90 % 225 252 33
70 % 225 252 43
50 % 237 286 60
40 % 950 1165 3
30 % 1658 2025 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 251 22
95 % 224 251 33 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 224 251 35
70 % 224 251 45
50 % 224 251 83
40 % 236 285 83
30 % 236 285 100
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 167 61
95 % 184 199 60 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 184 199 64
70 % 231 254 31
50 % 231 255 78
40 % 231 255 100
30 % 486 562 10
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 13
95 % 225 252 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 225 252 25
70 % 225 252 41
50 % 225 252 81
40 % 237 285 82
30 % 237 286 95
Entity #13 | Chains: 1,M
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 17
95 % 225 252 25 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 225 252 28
70 % 225 252 37
50 % 225 252 82
40 % 237 271 95
30 % 237 271 106
Entity #14 | Chains: 2,N
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 14
95 % 225 252 23 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 225 252 26
70 % 225 252 35
50 % 237 271 72
40 % 237 271 94
30 % 487 562 10
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 20
95 % 225 252 30 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 225 252 32
70 % 225 252 42
50 % 237 286 58
40 % 951 1165 3
30 % 1659 2025 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 15
95 % 225 252 24 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 225 252 27
70 % 225 252 36
50 % 237 286 62
40 % 952 1165 3
30 % 1660 2025 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 252 16
95 % 225 253 22 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 225 253 24
70 % 225 253 34
50 % 237 287 57
40 % 953 1165 3
30 % 1661 2025 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 223 250 23
95 % 225 252 26 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 225 252 29
70 % 225 252 38
50 % 237 286 63
40 % 237 286 84
30 % 1662 2025 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 36 525
95 % 30 36 659 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 30 36 683
70 % 30 36 726
50 % 237 286 50
40 % 237 286 69
30 % 1663 2025 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 21
95 % 225 252 32 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 225 252 34
70 % 225 252 44
50 % 237 285 64
40 % 237 286 80
30 % 1664 2025 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 204 219 43
95 % 225 252 28 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 225 252 31
70 % 225 252 40
50 % 237 286 59
40 % 237 286 79
30 % 237 286 97
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 18
95 % 225 252 27 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 225 252 30
70 % 225 252 39
50 % 237 285 61
40 % 237 286 78
30 % 237 286 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures