Sequence Similarity Clusters for the Entities in PDB 2FAK

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 15
95 % 225 252 28 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 225 252 29
70 % 225 252 38
50 % 237 282 45
40 % 950 1149 3
30 % 1658 1997 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 251 18
95 % 224 251 33 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 224 251 34
70 % 224 251 43
50 % 224 251 80
40 % 236 281 61
30 % 236 281 78
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 134 88
95 % 184 199 58 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 184 199 62
70 % 231 254 27
50 % 231 255 70
40 % 231 255 91
30 % 486 560 13
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 192 219 25
95 % 225 252 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 225 252 30
70 % 225 252 39
50 % 225 252 78
40 % 237 281 60
30 % 237 282 76
Entity #13 | Chains: 1,M
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 10
95 % 225 252 22 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 225 252 24
70 % 225 252 33
50 % 225 252 77
40 % 237 271 68
30 % 237 271 84
Entity #14 | Chains: 2,N
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 16
95 % 225 252 31 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 225 252 32
70 % 225 252 41
50 % 237 271 54
40 % 237 271 69
30 % 487 560 13
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 12
95 % 225 252 25 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 225 252 26
70 % 225 252 35
50 % 237 282 44
40 % 951 1149 3
30 % 1659 1997 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 13
95 % 225 252 26 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 225 252 27
70 % 225 252 36
50 % 237 282 47
40 % 952 1149 3
30 % 1660 1997 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 224 252 11
95 % 224 252 23 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 225 253 22
70 % 225 253 30
50 % 237 283 42
40 % 953 1149 3
30 % 1661 1997 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 223 250 19
95 % 225 252 30 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 225 252 31
70 % 225 252 40
50 % 237 282 46
40 % 237 282 59
30 % 1662 1997 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 36 456
95 % 30 36 631 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 30 36 659
70 % 30 36 703
50 % 42 66 363
40 % 42 66 379
30 % 1663 1997 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 14
95 % 225 252 27 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 225 252 28
70 % 225 252 37
50 % 237 281 48
40 % 237 282 56
30 % 1664 1997 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 202 217 24
95 % 225 252 24 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 225 252 25
70 % 225 252 34
50 % 237 282 43
40 % 237 282 55
30 % 237 282 75
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 225 252 17
95 % 225 252 32 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 225 252 33
70 % 225 252 42
50 % 237 281 49
40 % 237 282 57
30 % 237 282 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures