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Crystal structure of Salinosporamide A in complex with the yeast 20S proteasome
Sequence Clustering and Redundancy Reduction Results
2FAK
Sequence Clusters for the Sequence Entities in PDB 2FAK
Entity #1: Chains: A,O - Proteasome component Y7 protein, length: 250 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 88
95% 55 72 139
90% 55 72 153
70% 55 72 179
50% 55 77 186
40% 222 324 11
30% 384 555 8
Entity #10: Chains: J,X - Proteasome component C11 protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 93
95% 55 72 145
90% 55 72 159
70% 55 72 185
50% 55 72 224
40% 55 77 225
30% 55 77 236
Entity #11: Chains: K,Y - Proteasome component PRE2 protein, length: 212 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 60 127
95% 52 66 162
90% 52 66 174
70% 52 66 204
50% 52 71 207
40% 52 71 240
30% 119 171 31
Entity #12: Chains: L,Z - Proteasome component C5 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 89
95% 55 72 140
90% 55 72 154
70% 55 72 180
50% 55 72 222
40% 55 77 222
30% 55 77 234
Entity #13: Chains: 1,M - Proteasome component PRE4 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 83
95% 55 72 134
90% 55 72 149
70% 55 72 175
50% 55 72 221
40% 55 77 220
30% 55 77 233
Entity #14: Chains: 2,N - Proteasome component PRE3 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 91
95% 55 72 143
90% 55 72 157
70% 55 72 183
50% 55 77 187
40% 55 77 223
30% 120 171 31
Entity #2: Chains: B,P - Proteasome component Y13 protein, length: 244 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 85
95% 55 72 136
90% 55 72 150
70% 55 72 176
50% 55 77 183
40% 223 324 11
30% 385 555 8
Entity #3: Chains: C,Q - Proteasome component PRE6 protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 86
95% 55 72 137
90% 55 72 151
70% 55 72 177
50% 55 77 184
40% 224 324 11
30% 386 555 8
Entity #4: Chains: D,R - Proteasome component PUP2 protein, length: 242 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 72 84
95% 54 72 135
90% 55 73 141
70% 55 73 166
50% 55 78 179
40% 225 324 11
30% 387 555 8
Entity #5: Chains: E,S - Proteasome component PRE5 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 70 100
95% 55 72 142
90% 55 72 156
70% 55 72 182
50% 55 72 223
40% 55 72 252
30% 388 555 8
Entity #6: Chains: F,T - Proteasome component C1 protein, length: 244 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 37 273
95% 31 37 390
90% 31 37 414
70% 31 37 440
50% 31 42 394
40% 31 42 417
30% 389 555 8
Entity #7: Chains: G,U - Proteasome component C7-alpha protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 87
95% 55 72 138
90% 55 72 152
70% 55 72 178
50% 55 77 185
40% 55 77 221
30% 390 555 8
Entity #8: Chains: H,V - Proteasome component PUP1 protein, length: 222 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 66 110
95% 52 66 161
90% 52 66 173
70% 52 66 203
50% 52 71 206
40% 52 71 239
30% 52 71 258
Entity #9: Chains: I,W - Proteasome component PUP3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 72 92
95% 55 72 144
90% 55 72 158
70% 55 72 184
50% 55 77 188
40% 55 77 224
30% 55 77 235
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.