Sequence Similarity Clusters for the Entities in PDB 2FAK

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 18
95 % 180 199 28
90 % 180 199 32
70 % 180 199 41
50 % 182 208 68
40 % 730 849 4
30 % 1273 1474 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 198 22
95 % 179 198 34
90 % 179 198 38
70 % 179 198 49
50 % 179 198 84
40 % 181 207 91
30 % 181 207 109
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 125 81
95 % 175 190 49
90 % 175 190 55
70 % 175 190 64
50 % 177 199 76
40 % 177 199 95
30 % 371 430 16
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 19
95 % 180 199 29
90 % 180 199 33
70 % 180 199 42
50 % 180 199 81
40 % 182 207 89
30 % 182 208 106
Entity #13 | Chains: 1,M
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 13
95 % 180 199 22
90 % 180 199 27
70 % 180 199 36
50 % 180 199 80
40 % 182 207 87
30 % 182 207 108
Entity #14 | Chains: 2,N
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 20
95 % 180 199 31
90 % 180 199 35
70 % 180 199 45
50 % 182 207 72
40 % 182 207 90
30 % 372 430 16
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 15
95 % 180 199 25
90 % 180 199 29
70 % 180 199 38
50 % 182 208 66
40 % 731 849 4
30 % 1274 1474 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 16
95 % 180 199 26
90 % 180 199 30
70 % 180 199 39
50 % 182 207 70
40 % 732 849 4
30 % 1275 1474 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 199 14
95 % 179 199 23
90 % 180 200 26
70 % 180 200 34
50 % 182 209 65
40 % 733 849 4
30 % 1276 1474 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 197 23
95 % 180 199 30
90 % 180 199 34
70 % 180 199 44
50 % 182 207 69
40 % 182 207 88
30 % 1277 1474 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 36 308
95 % 30 36 454
90 % 30 36 482
70 % 30 36 528
50 % 32 45 362
40 % 32 45 391
30 % 1278 1474 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 17
95 % 180 199 27
90 % 180 199 31
70 % 180 199 40
50 % 182 207 71
40 % 182 208 84
30 % 1279 1474 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 175 41
95 % 180 199 24
90 % 180 199 28
70 % 180 199 37
50 % 182 208 67
40 % 182 208 83
30 % 182 208 105
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 199 21
95 % 180 199 32
90 % 180 199 36
70 % 180 199 46
50 % 182 207 73
40 % 182 208 85
30 % 182 208 107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.