Sequence Similarity Clusters for the Entities in PDB 2FAK

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 17
95 % 185 206 28
90 % 185 206 31
70 % 185 206 39
50 % 197 228 61
40 % 790 929 3
30 % 1378 1614 3
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 205 21
95 % 184 205 33
90 % 184 205 36
70 % 184 205 44
50 % 184 205 82
40 % 196 227 82
30 % 196 227 101
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 129 77
95 % 179 194 41
90 % 179 194 47
70 % 179 194 56
50 % 191 213 74
40 % 191 213 94
30 % 400 461 15
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 18
95 % 185 206 29
90 % 185 206 32
70 % 185 206 40
50 % 185 206 80
40 % 197 227 81
30 % 197 228 99
Entity #13 | Chains: 1,M
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 12
95 % 185 206 22
90 % 185 206 26
70 % 185 206 34
50 % 185 206 79
40 % 197 224 83
30 % 197 224 104
Entity #14 | Chains: 2,N
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 19
95 % 185 206 31
90 % 185 206 34
70 % 185 206 42
50 % 197 224 66
40 % 197 224 84
30 % 401 461 15
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 14
95 % 185 206 25
90 % 185 206 28
70 % 185 206 36
50 % 197 228 60
40 % 791 929 3
30 % 1379 1614 3
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 15
95 % 185 206 26
90 % 185 206 29
70 % 185 206 37
50 % 197 227 63
40 % 792 929 3
30 % 1380 1614 3
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 206 13
95 % 184 206 23
90 % 185 207 24
70 % 185 207 33
50 % 197 229 58
40 % 793 929 3
30 % 1381 1614 3
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 204 23
95 % 185 206 30
90 % 185 206 33
70 % 185 206 41
50 % 197 227 62
40 % 197 227 80
30 % 1382 1614 3
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 36 319
95 % 30 36 470
90 % 30 36 500
70 % 30 36 546
50 % 42 58 306
40 % 42 58 329
30 % 1383 1614 3
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 16
95 % 185 206 27
90 % 185 206 30
70 % 185 206 38
50 % 197 227 64
40 % 197 228 78
30 % 1384 1614 3
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 177 42
95 % 185 206 24
90 % 185 206 27
70 % 185 206 35
50 % 197 228 59
40 % 197 228 77
30 % 197 228 98
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 206 20
95 % 185 206 32
90 % 185 206 35
70 % 185 206 43
50 % 197 227 65
40 % 197 228 79
30 % 197 228 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.