Sequence Similarity Clusters for the Entities in PDB 2F5B

Entity #1 | Chains: L
PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1241
95 % 8 41 1287 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 209 720 3
70 % 694 2327 1
50 % 1423 4713 1
40 % 1423 4713 1
30 % 1598 5567 1
Entity #2 | Chains: H
PROTEIN (ANTIBODY 2F5 (HEAVY CHAIN)) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27349
95 % 8 41 1284 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 8 41 1313
70 % 686 2280 2
50 % 1424 4713 1
40 % 1424 4713 1
30 % 1599 5567 1
Entity #3 | Chains: P
PROTEIN (GP41 EPITOPE) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.