Sequence Similarity Clusters for the Entities in PDB 2F5B

Entity #1 | Chains: L
PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1256
95 % 8 41 1300 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 221 742 3
70 % 715 2385 1
50 % 1467 4827 1
40 % 1467 4827 1
30 % 1647 5688 1
Entity #2 | Chains: H
PROTEIN (ANTIBODY 2F5 (HEAVY CHAIN)) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27689
95 % 8 41 1297 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 8 41 1325
70 % 707 2334 2
50 % 1468 4827 1
40 % 1468 4827 1
30 % 1648 5688 1
Entity #3 | Chains: P
PROTEIN (GP41 EPITOPE) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures