Sequence Similarity Clusters for the Entities in PDB 2F5B

Entity #1 | Chains: L
PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1292
95 % 8 41 1331 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 242 788 2
70 % 753 2474 1
50 % 1544 5011 1
40 % 1544 5011 1
30 % 1765 5941 1
Entity #2 | Chains: H
PROTEIN (ANTIBODY 2F5 (HEAVY CHAIN)) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28342
95 % 8 41 1328 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 8 41 1353
70 % 745 2424 2
50 % 1545 5011 1
40 % 1545 5011 1
30 % 1766 5941 1
Entity #3 | Chains: P
PROTEIN (GP41 EPITOPE) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures