Sequence Similarity Clusters for the Entities in PDB 2F5B

Entity #1 | Chains: L
PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 33 1261
95 % 8 41 1307 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 223 746 3
70 % 718 2392 1
50 % 1473 4843 1
40 % 1473 4843 1
30 % 1653 5705 1
Entity #2 | Chains: H
PROTEIN (ANTIBODY 2F5 (HEAVY CHAIN)) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27769
95 % 8 41 1304 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 8 41 1331
70 % 710 2342 2
50 % 1474 4843 1
40 % 1474 4843 1
30 % 1654 5705 1
Entity #3 | Chains: P
PROTEIN (GP41 EPITOPE) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures