Sequence Similarity Clusters for the Entities in PDB 2F4V

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 90 190
95 % 208 239 35
90 % 208 239 40
70 % 208 239 49
50 % 241 324 39
40 % 241 324 49
30 % 261 392 47
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 207 237 25
95 % 208 238 38
90 % 208 238 43
70 % 208 238 53
50 % 247 330 30
40 % 247 330 40
30 % 267 396 41
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 208 239 23
95 % 208 239 34
90 % 208 239 39
70 % 208 239 48
50 % 241 324 38
40 % 263 397 27
30 % 263 398 39
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 194 42
95 % 208 246 22
90 % 208 246 27
70 % 241 335 23
50 % 241 336 29
40 % 241 336 39
30 % 241 336 56
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 208 240 20
95 % 208 240 32
90 % 208 240 37
70 % 208 240 46
50 % 244 329 35
40 % 244 329 46
30 % 264 397 46
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 208 238 24
95 % 208 238 39
90 % 208 238 44
70 % 208 239 51
50 % 208 239 82
40 % 208 239 107
30 % 208 239 123
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 208 242 16
95 % 212 247 21
90 % 212 247 26
70 % 212 247 37
50 % 248 337 27
40 % 248 338 38
30 % 248 338 54
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 208 234 26
95 % 208 239 36
90 % 208 239 41
70 % 208 239 50
50 % 208 239 81
40 % 208 240 106
30 % 244 327 64
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 84 225
95 % 205 233 40
90 % 207 237 45
70 % 207 237 54
50 % 207 237 87
40 % 207 237 113
30 % 207 237 128
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 49 564
95 % 184 205 63
90 % 184 205 66
70 % 184 205 75
50 % 184 205 109
40 % 184 205 129
30 % 184 205 145
Entity #2 | Chains: Z
5'-R(P*UP*UP*CP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 209 242 15
95 % 209 242 26
90 % 209 242 31
70 % 209 242 42
50 % 242 327 34
40 % 242 327 44
30 % 242 327 60
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 50 370
95 % 208 238 37
90 % 208 238 42
70 % 208 238 52
50 % 208 238 83
40 % 208 238 109
30 % 208 238 125
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 208 239 17
95 % 208 240 27
90 % 208 240 33
70 % 208 240 43
50 % 241 323 37
40 % 241 324 47
30 % 241 324 63
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 204 43
95 % 184 204 64
90 % 184 204 67
70 % 184 204 76
50 % 202 252 68
40 % 202 252 93
30 % 202 252 110
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 7590
95 % 208 240 28
90 % 208 240 34
70 % 208 240 44
50 % 241 324 36
40 % 241 325 45
30 % 241 325 62
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 208 239 22
95 % 208 239 33
90 % 208 239 38
70 % 208 239 47
50 % 242 328 33
40 % 242 328 43
30 % 242 330 59
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 210 244 13
95 % 216 250 20
90 % 216 250 25
70 % 216 250 35
50 % 216 250 70
40 % 216 250 94
30 % 233 289 80
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 209 243 14
95 % 209 244 25
90 % 209 244 29
70 % 209 244 40
50 % 230 289 50
40 % 230 290 62
30 % 230 290 83
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 207 239 19
95 % 207 239 31
90 % 209 243 30
70 % 209 243 41
50 % 244 330 31
40 % 245 332 41
30 % 266 401 37

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.