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30S ribosome + designer antibiotic
Sequence Clustering and Redundancy Reduction Results
2F4V
Sequence Clusters for the Sequence Entities in PDB 2F4V
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 90 160
95% 177 206 42
90% 177 206 44
70% 177 206 53
50% 209 284 42
40% 209 284 52
30% 229 338 49
Entity #11: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 204 25
95% 177 205 45
90% 177 205 47
70% 177 205 57
50% 215 290 35
40% 215 290 45
30% 235 342 46
Entity #12: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 206 23
95% 177 206 41
90% 177 206 43
70% 177 206 52
50% 209 284 41
40% 231 343 34
30% 231 344 45
Entity #13: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 172 33
95% 177 213 32
90% 177 213 35
70% 209 295 24
50% 209 296 34
40% 209 296 44
30% 209 296 67
Entity #14: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 207 20
95% 177 207 39
90% 177 207 41
70% 177 207 50
50% 212 289 39
40% 212 289 49
30% 232 343 48
Entity #15: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 205 24
95% 177 205 46
90% 177 205 48
70% 177 206 55
50% 177 206 85
40% 177 206 110
30% 177 206 129
Entity #16: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 209 18
95% 181 214 30
90% 181 214 33
70% 181 214 43
50% 216 297 33
40% 216 298 43
30% 216 298 65
Entity #17: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 201 29
95% 177 206 43
90% 177 206 45
70% 177 206 54
50% 177 206 84
40% 177 207 109
30% 212 287 74
Entity #18: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 80 223
95% 174 200 47
90% 176 204 49
70% 176 204 58
50% 176 204 87
40% 176 204 112
30% 176 204 131
Entity #19: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 515
95% 159 180 55
90% 159 180 57
70% 159 180 72
50% 159 180 119
40% 159 180 143
30% 159 180 159
Entity #2: Chains: Z - 5'-R(P*UP*UP*CP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 209 17
95% 178 209 34
90% 178 209 38
70% 178 209 47
50% 210 287 38
40% 210 287 48
30% 210 287 71
Entity #21: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 362
95% 177 205 44
90% 177 205 46
70% 177 205 56
50% 177 205 86
40% 177 205 111
30% 177 205 130
Entity #3: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 206 21
95% 177 207 36
90% 177 207 39
70% 177 207 48
50% 209 283 43
40% 209 284 51
30% 209 284 73
Entity #4: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 179 36
95% 159 179 56
90% 159 179 59
70% 159 179 73
50% 176 220 77
40% 176 220 101
30% 176 220 120
Entity #5: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 7037
95% 177 207 37
90% 177 207 40
70% 177 207 49
50% 209 284 40
40% 209 285 50
30% 209 285 72
Entity #6: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 206 22
95% 177 206 40
90% 177 206 42
70% 177 206 51
50% 210 288 37
40% 210 288 47
30% 210 290 69
Entity #7: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 211 15
95% 185 217 28
90% 185 217 31
70% 185 217 41
50% 185 217 78
40% 185 217 102
30% 202 256 85
Entity #8: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 210 16
95% 178 211 33
90% 178 211 36
70% 178 211 45
50% 199 254 52
40% 199 255 67
30% 199 255 88
Entity #9: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 206 19
95% 176 206 38
90% 178 210 37
70% 178 210 46
50% 212 290 36
40% 213 292 46
30% 234 347 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.