POP-OUT | CLOSE
 
30S ribosome + designer antibiotic
Sequence Clustering and Redundancy Reduction Results
2F4V
Sequence Clusters for the Sequence Entities in PDB 2F4V
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 113 134
95% 222 260 44
90% 222 260 47
70% 222 260 58
50% 284 368 41
40% 284 368 56
30% 292 404 58
Entity #11: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 257 29
95% 222 259 47
90% 222 259 51
70% 222 259 61
50% 290 374 34
40% 290 374 46
30% 290 379 66
Entity #12: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 260 26
95% 222 260 43
90% 222 260 46
70% 222 260 57
50% 284 368 42
40% 294 408 40
30% 294 408 53
Entity #13: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 229 36
95% 222 267 36
90% 222 267 38
70% 284 380 24
50% 284 380 33
40% 284 380 45
30% 284 380 69
Entity #14: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 261 22
95% 222 261 41
90% 222 261 43
70% 222 261 55
50% 284 370 39
40% 284 370 53
30% 292 406 57
Entity #15: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 259 27
95% 222 259 48
90% 222 259 52
70% 222 259 62
50% 222 259 97
40% 222 259 123
30% 222 259 141
Entity #16: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 263 20
95% 226 268 35
90% 226 268 37
70% 226 268 48
50% 291 381 32
40% 291 381 43
30% 291 381 68
Entity #17: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 255 30
95% 222 260 45
90% 222 260 48
70% 222 260 59
50% 222 260 94
40% 222 260 120
30% 284 368 78
Entity #18: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 92 220
95% 219 254 50
90% 221 258 53
70% 221 258 63
50% 221 258 99
40% 221 258 124
30% 221 258 142
Entity #19: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 464
95% 202 224 63
90% 202 224 67
70% 202 224 81
50% 202 224 115
40% 202 224 141
30% 202 224 162
Entity #2: Chains: Z - 5'-R(P*UP*UP*CP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 226 37
95% 202 226 62
90% 202 226 65
70% 202 226 80
50% 285 371 38
40% 285 371 51
30% 285 371 75
Entity #21: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 61 360
95% 222 259 46
90% 222 259 50
70% 222 259 60
50% 222 259 96
40% 222 259 122
30% 222 259 140
Entity #3: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 260 24
95% 222 261 38
90% 222 261 41
70% 222 261 52
50% 222 261 92
40% 284 368 55
30% 284 368 77
Entity #4: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 222 39
95% 201 222 65
90% 201 222 69
70% 201 222 82
50% 239 285 76
40% 239 285 100
30% 239 285 124
Entity #5: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 6560
95% 222 261 39
90% 222 261 42
70% 222 261 53
50% 284 368 40
40% 284 369 54
30% 284 369 76
Entity #6: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 260 25
95% 222 260 42
90% 222 260 44
70% 222 260 56
50% 285 372 37
40% 285 372 50
30% 285 374 72
Entity #7: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 265 18
95% 230 271 33
90% 230 271 35
70% 230 271 47
50% 230 271 87
40% 230 271 112
30% 256 318 94
Entity #8: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 264 19
95% 223 265 37
90% 223 265 39
70% 223 265 49
50% 250 313 56
40% 250 314 72
30% 250 314 96
Entity #9: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 260 21
95% 221 260 40
90% 223 264 40
70% 223 264 50
50% 287 374 35
40% 288 376 47
30% 297 413 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.