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30S ribosome + designer antibiotic
Sequence Clustering and Redundancy Reduction Results
2F4V
Sequence Clusters for the Sequence Entities in PDB 2F4V
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 90 158
95% 170 199 41
90% 170 199 43
70% 170 199 55
50% 202 276 41
40% 202 276 54
30% 222 328 50
Entity #11: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 197 29
95% 170 198 45
90% 170 198 47
70% 170 198 59
50% 208 282 35
40% 208 282 45
30% 228 333 45
Entity #12: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 199 25
95% 170 199 40
90% 170 199 42
70% 170 199 54
50% 202 276 42
40% 224 332 35
30% 224 332 46
Entity #13: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 166 36
95% 170 206 31
90% 170 206 33
70% 202 288 24
50% 202 288 34
40% 202 288 44
30% 202 288 69
Entity #14: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 200 22
95% 170 200 38
90% 170 200 40
70% 170 200 51
50% 205 281 39
40% 205 281 50
30% 225 333 49
Entity #15: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 198 26
95% 170 198 46
90% 170 198 48
70% 170 198 60
50% 170 198 92
40% 170 198 114
30% 170 198 137
Entity #16: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 202 20
95% 174 207 30
90% 174 207 32
70% 174 207 43
50% 209 289 33
40% 209 289 43
30% 209 289 67
Entity #17: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 194 30
95% 170 199 42
90% 170 199 44
70% 170 199 56
50% 170 199 89
40% 170 199 112
30% 205 279 76
Entity #18: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 80 222
95% 167 193 50
90% 169 197 49
70% 169 197 61
50% 169 197 93
40% 169 197 116
30% 169 197 138
Entity #19: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 507
95% 153 174 71
90% 153 174 75
70% 153 174 88
50% 153 174 128
40% 153 174 146
30% 153 174 164
Entity #2: Chains: Z - 5'-R(P*UP*UP*CP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 202 19
95% 171 202 33
90% 171 202 36
70% 171 202 47
50% 203 279 38
40% 203 279 49
30% 203 279 73
Entity #21: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 357
95% 170 198 44
90% 170 198 46
70% 170 198 58
50% 170 198 91
40% 170 198 113
30% 170 198 136
Entity #3: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 199 23
95% 170 200 35
90% 170 200 38
70% 170 200 48
50% 170 200 88
40% 202 276 53
30% 202 276 75
Entity #4: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 173 48
95% 153 173 72
90% 153 173 76
70% 153 173 90
50% 170 214 76
40% 170 214 102
30% 170 214 122
Entity #5: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 6965
95% 170 200 36
90% 170 200 39
70% 170 200 49
50% 202 276 40
40% 202 277 51
30% 202 277 74
Entity #6: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 199 24
95% 170 199 39
90% 170 199 41
70% 170 199 52
50% 203 280 37
40% 203 280 48
30% 203 282 72
Entity #7: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 204 17
95% 178 210 29
90% 178 210 31
70% 178 210 42
50% 178 210 82
40% 178 210 107
30% 195 248 87
Entity #8: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 203 18
95% 171 204 32
90% 171 204 34
70% 171 204 44
50% 192 246 53
40% 192 247 70
30% 192 247 94
Entity #9: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 199 21
95% 169 199 37
90% 171 203 35
70% 171 203 45
50% 205 282 36
40% 206 284 46
30% 227 337 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.