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30S ribosome + designer antibiotic
Sequence Clustering and Redundancy Reduction Results
2F4V
Sequence Clusters for the Sequence Entities in PDB 2F4V
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 89 181
95% 190 219 48
90% 190 219 52
70% 190 219 62
50% 223 300 43
40% 223 300 52
30% 243 364 46
Entity #11: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 217 36
95% 190 218 51
90% 190 218 55
70% 190 218 66
50% 229 306 31
40% 229 306 42
30% 249 368 40
Entity #12: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 219 34
95% 190 219 47
90% 190 219 51
70% 190 219 61
50% 223 300 42
40% 245 369 30
30% 245 370 38
Entity #13: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 182 46
95% 190 226 39
90% 190 226 43
70% 223 311 22
50% 223 312 30
40% 223 312 41
30% 223 312 57
Entity #14: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 220 32
95% 190 220 45
90% 190 220 49
70% 190 220 59
50% 226 305 39
40% 226 305 50
30% 246 369 44
Entity #15: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 218 35
95% 190 218 52
90% 190 218 56
70% 190 219 64
50% 190 219 92
40% 190 219 114
30% 190 219 128
Entity #16: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 222 29
95% 194 227 36
90% 194 227 40
70% 194 227 52
50% 230 313 29
40% 230 314 39
30% 230 314 54
Entity #17: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 214 37
95% 190 219 49
90% 190 219 53
70% 190 219 63
50% 190 219 91
40% 190 220 113
30% 226 303 70
Entity #18: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 80 226
95% 187 213 56
90% 189 217 58
70% 189 217 69
50% 189 217 94
40% 189 217 116
30% 189 217 130
Entity #19: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 532
95% 173 194 64
90% 173 194 67
70% 173 194 79
50% 173 194 113
40% 173 194 131
30% 173 194 150
Entity #2: Chains: Z - 5'-R(P*UP*UP*CP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 222 28
95% 191 222 41
90% 191 222 46
70% 191 222 56
50% 224 303 38
40% 224 303 48
30% 224 303 67
Entity #21: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 371
95% 190 218 50
90% 190 218 54
70% 190 218 65
50% 190 218 93
40% 190 218 115
30% 190 218 129
Entity #3: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 219 30
95% 190 220 42
90% 190 220 47
70% 190 220 57
50% 223 299 41
40% 223 300 51
30% 223 300 69
Entity #4: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 193 45
95% 173 193 65
90% 173 193 68
70% 173 193 80
50% 191 237 77
40% 191 237 102
30% 191 237 121
Entity #5: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 7269
95% 190 220 43
90% 190 220 48
70% 190 220 58
50% 223 300 40
40% 223 301 49
30% 223 301 68
Entity #6: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 219 33
95% 190 219 46
90% 190 219 50
70% 190 219 60
50% 224 304 37
40% 224 304 47
30% 224 306 63
Entity #7: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 224 25
95% 198 230 24
90% 198 230 29
70% 198 230 41
50% 198 230 83
40% 198 230 108
30% 215 269 80
Entity #8: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 223 27
95% 191 224 40
90% 191 224 44
70% 191 224 54
50% 212 267 51
40% 212 268 64
30% 212 268 83
Entity #9: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 219 31
95% 189 219 44
90% 191 223 45
70% 191 223 55
50% 226 306 35
40% 227 308 43
30% 248 373 37
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.