Sequence Similarity Clusters for the Entities in PDB 2F4V

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 73 94 223
95 % 246 292 46 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 246 292 51
70 % 246 292 61
50 % 286 443 34
40 % 286 444 48
30 % 324 573 36
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 245 290 34
95 % 246 291 49 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 246 291 54
70 % 246 291 65
50 % 292 455 25
40 % 292 455 40
30 % 330 572 34
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 246 292 32
95 % 246 292 45 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 246 292 50
70 % 246 292 60
50 % 286 449 33
40 % 326 584 19
30 % 326 584 33
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 170 220 54
95 % 246 299 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 246 299 41
70 % 286 453 17
50 % 286 466 24
40 % 286 466 38
30 % 286 466 57
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 246 293 30
95 % 246 293 43 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 246 293 47
70 % 246 293 58
50 % 289 453 32
40 % 289 453 46
30 % 327 573 37
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 246 291 33
95 % 246 291 50 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 246 291 55
70 % 246 304 49
50 % 246 304 89
40 % 246 304 110
30 % 246 304 122
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 246 295 27
95 % 250 300 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 250 300 40
70 % 250 300 50
50 % 293 461 26
40 % 293 466 37
30 % 293 466 56
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 246 287 35
95 % 246 292 47 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 246 292 52
70 % 246 292 62
50 % 246 302 90
40 % 246 308 107
30 % 289 451 64
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 68 91 276
95 % 242 285 51 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 244 289 56
70 % 244 289 66
50 % 244 289 94
40 % 244 289 117
30 % 244 289 127
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 51 753
95 % 213 246 65 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 213 246 68
70 % 213 246 84
50 % 213 246 113
40 % 213 246 138
30 % 213 246 143
Entity #2 | Chains: Z
5'-R(P*UP*UP*CP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 247 295 26
95 % 247 295 39
90 % 247 295 44
70 % 247 295 54
50 % 287 455 28
40 % 287 458 42
30 % 287 458 58
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 53 499
95 % 246 291 48
90 % 246 291 53
70 % 246 291 64
50 % 246 291 93
40 % 246 291 116
30 % 246 291 126
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 246 292 28
95 % 246 293 40 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 246 293 45
70 % 246 293 55
50 % 286 441 35
40 % 286 447 47
30 % 286 447 63
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 213 245 46
95 % 213 245 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 213 245 69
70 % 213 245 85
50 % 231 320 86
40 % 231 320 104
30 % 231 320 116
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 9529
95 % 246 293 41 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 246 293 46
70 % 246 293 57
50 % 286 449 29
40 % 286 455 43
30 % 286 455 59
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 246 292 31
95 % 246 292 44 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 246 292 49
70 % 246 292 59
50 % 287 450 31
40 % 287 450 45
30 % 287 452 61
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 248 297 24
95 % 254 303 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 254 303 39
70 % 254 303 48
50 % 254 303 88
40 % 254 303 109
30 % 278 386 88
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 247 296 25
95 % 247 297 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 247 297 42
70 % 247 297 51
50 % 275 388 60
40 % 275 394 71
30 % 275 394 87
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 245 292 29
95 % 245 292 42
90 % 247 296 43
70 % 247 296 52
50 % 289 454 27
40 % 290 461 39
30 % 330 589 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures