Sequence Similarity Clusters for the Entities in PDB 2F4V

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 71 91 220
95 % 229 271 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 229 271 55
70 % 229 271 66
50 % 269 414 33
40 % 269 414 47
30 % 302 532 34
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 228 269 39
95 % 229 270 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 229 270 58
70 % 229 270 69
50 % 275 425 26
40 % 275 425 39
30 % 308 532 32
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 271 35
95 % 229 271 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 229 271 54
70 % 229 271 65
50 % 269 419 32
40 % 304 543 19
30 % 304 543 31
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 217 52
95 % 229 278 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 229 278 44
70 % 269 423 18
50 % 269 436 24
40 % 269 436 35
30 % 269 436 56
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 272 33
95 % 229 272 46 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 229 272 51
70 % 229 272 62
50 % 272 423 31
40 % 272 423 44
30 % 305 532 35
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 270 36
95 % 229 270 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 229 270 59
70 % 229 283 53
50 % 229 283 91
40 % 229 283 112
30 % 229 283 124
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 274 30
95 % 233 279 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 233 279 43
70 % 233 279 54
50 % 276 432 25
40 % 276 437 34
30 % 276 437 55
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 266 41
95 % 229 271 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 229 271 56
70 % 229 271 67
50 % 229 281 92
40 % 229 281 114
30 % 272 416 63
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 87 258
95 % 226 265 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 228 269 60
70 % 228 269 70
50 % 228 269 95
40 % 228 269 117
30 % 228 269 128
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 51 721
95 % 204 236 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 204 236 69
70 % 204 236 81
50 % 204 236 114
40 % 204 236 136
30 % 204 236 145
Entity #2 | Chains: Z
5'-R(P*UP*UP*CP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 274 29
95 % 230 274 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 230 274 48
70 % 230 274 58
50 % 270 425 28
40 % 270 428 41
30 % 270 428 57
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 51 526
95 % 229 270 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 229 270 57
70 % 229 270 68
50 % 229 270 94
40 % 229 270 116
30 % 229 270 127
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 271 31
95 % 229 272 43 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 229 272 49
70 % 229 272 59
50 % 269 412 34
40 % 269 417 45
30 % 269 417 61
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 235 49
95 % 204 235 66
90 % 204 235 70
70 % 204 235 82
50 % 222 309 85
40 % 222 309 103
30 % 222 309 118
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 9045
95 % 229 272 44
90 % 229 272 50
70 % 229 272 60
50 % 269 420 29
40 % 269 425 42
30 % 269 425 58
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 271 34
95 % 229 271 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 229 271 53
70 % 229 271 64
50 % 270 420 30
40 % 270 420 43
30 % 270 422 60
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 231 276 27
95 % 237 282 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 237 282 42
70 % 237 282 52
50 % 237 282 90
40 % 237 282 111
30 % 261 359 95
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 275 28
95 % 230 276 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 230 276 46
70 % 230 276 56
50 % 258 360 66
40 % 258 365 84
30 % 258 365 96
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 228 271 32
95 % 228 271 45 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 230 275 47
70 % 230 275 57
50 % 272 425 27
40 % 273 431 37
30 % 308 548 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.