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30S ribosome + designer antibiotic
Sequence Clustering and Redundancy Reduction Results
2F4V
Sequence Clusters for the Sequence Entities in PDB 2F4V
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 90 167
95% 191 220 48
90% 191 220 52
70% 191 220 63
50% 223 300 43
40% 223 300 52
30% 243 356 48
Entity #11: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 218 36
95% 191 219 51
90% 191 219 55
70% 191 219 67
50% 229 306 33
40% 229 306 43
30% 249 360 42
Entity #12: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 220 34
95% 191 220 47
90% 191 220 51
70% 191 220 62
50% 223 300 42
40% 245 361 30
30% 245 362 41
Entity #13: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 183 46
95% 191 227 38
90% 191 227 42
70% 223 311 23
50% 223 312 32
40% 223 312 42
30% 223 312 57
Entity #14: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 221 32
95% 191 221 45
90% 191 221 49
70% 191 221 60
50% 226 305 38
40% 226 305 50
30% 246 361 47
Entity #15: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 219 35
95% 191 219 52
90% 191 219 56
70% 191 220 65
50% 191 220 92
40% 191 220 113
30% 191 220 126
Entity #16: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 223 29
95% 195 228 26
90% 195 228 31
70% 195 228 43
50% 230 313 29
40% 230 314 40
30% 230 314 55
Entity #17: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 215 37
95% 191 220 49
90% 191 220 53
70% 191 220 64
50% 191 220 91
40% 191 221 112
30% 226 303 70
Entity #18: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 80 224
95% 188 214 56
90% 190 218 58
70% 190 218 69
50% 190 218 94
40% 190 218 116
30% 190 218 128
Entity #19: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 525
95% 173 194 64
90% 173 194 66
70% 173 194 79
50% 173 194 111
40% 173 194 130
30% 173 194 150
Entity #2: Chains: Z - 5'-R(P*UP*UP*CP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 223 27
95% 192 223 41
90% 192 223 46
70% 192 223 57
50% 224 303 37
40% 224 303 48
30% 224 303 67
Entity #21: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 367
95% 191 219 50
90% 191 219 54
70% 191 219 66
50% 191 219 93
40% 191 219 114
30% 191 219 127
Entity #3: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 220 30
95% 191 221 42
90% 191 221 47
70% 191 221 58
50% 223 299 41
40% 223 300 51
30% 223 300 69
Entity #4: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 193 45
95% 173 193 65
90% 173 193 67
70% 173 193 80
50% 190 236 78
40% 190 236 99
30% 190 236 119
Entity #5: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 7187
95% 191 221 43
90% 191 221 48
70% 191 221 59
50% 223 300 39
40% 223 301 49
30% 223 301 68
Entity #6: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 220 33
95% 191 220 46
90% 191 220 50
70% 191 220 61
50% 224 304 36
40% 224 304 47
30% 224 306 65
Entity #7: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 225 24
95% 199 231 24
90% 199 231 29
70% 199 231 41
50% 199 231 83
40% 199 231 105
30% 216 270 79
Entity #8: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 224 26
95% 192 225 40
90% 192 225 44
70% 192 225 55
50% 213 268 51
40% 213 269 62
30% 213 269 81
Entity #9: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 220 31
95% 190 220 44
90% 192 224 45
70% 192 224 56
50% 226 306 34
40% 227 308 44
30% 248 365 40
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.