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30S ribosome + designer antibiotic
Sequence Clustering and Redundancy Reduction Results
2F4V
Sequence Clusters for the Sequence Entities in PDB 2F4V
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 113 134
95% 219 255 45
90% 219 255 48
70% 219 255 60
50% 281 363 41
40% 281 363 56
30% 289 399 59
Entity #11: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 252 29
95% 219 254 48
90% 219 254 51
70% 219 254 63
50% 287 369 34
40% 287 369 48
30% 287 374 67
Entity #12: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 255 27
95% 219 255 44
90% 219 255 47
70% 219 255 59
50% 281 363 42
40% 291 403 39
30% 291 403 53
Entity #13: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 181 224 37
95% 219 262 36
90% 219 262 38
70% 281 375 24
50% 281 375 33
40% 281 375 47
30% 281 375 71
Entity #14: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 256 24
95% 219 256 42
90% 219 256 45
70% 219 256 57
50% 281 365 39
40% 281 365 53
30% 289 401 57
Entity #15: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 254 28
95% 219 254 49
90% 219 254 52
70% 219 254 64
50% 219 254 99
40% 219 254 124
30% 219 254 144
Entity #16: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 258 21
95% 223 263 35
90% 223 263 37
70% 223 263 48
50% 288 376 32
40% 288 376 45
30% 288 376 69
Entity #17: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 250 31
95% 219 255 46
90% 219 255 49
70% 219 255 61
50% 219 255 97
40% 219 255 122
30% 281 363 78
Entity #18: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 92 219
95% 216 249 51
90% 218 253 53
70% 218 253 65
50% 218 253 100
40% 218 253 126
30% 218 253 146
Entity #19: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 49 463
95% 199 221 64
90% 199 221 68
70% 199 221 81
50% 199 221 116
40% 199 221 144
30% 199 221 166
Entity #2: Chains: Z - 5'-R(P*UP*UP*CP*U)-3' rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 223 38
95% 199 223 63
90% 199 223 67
70% 199 223 80
50% 282 366 38
40% 282 366 52
30% 282 366 75
Entity #21: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 61 359
95% 219 254 47
90% 219 254 50
70% 219 254 62
50% 219 254 98
40% 219 254 123
30% 219 254 143
Entity #3: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 255 25
95% 219 256 39
90% 219 256 43
70% 219 256 55
50% 219 256 96
40% 281 363 55
30% 281 363 77
Entity #4: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 219 39
95% 198 219 66
90% 198 219 70
70% 198 219 83
50% 236 282 81
40% 236 282 101
30% 236 282 123
Entity #5: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 6535
95% 219 256 40
90% 219 256 44
70% 219 256 56
50% 281 363 40
40% 281 364 54
30% 281 364 76
Entity #6: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 255 26
95% 219 255 43
90% 219 255 46
70% 219 255 58
50% 282 367 37
40% 282 367 51
30% 282 369 72
Entity #7: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 260 18
95% 227 266 34
90% 227 266 36
70% 227 266 47
50% 227 266 88
40% 227 266 112
30% 253 313 95
Entity #8: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 259 20
95% 220 260 37
90% 220 260 39
70% 220 260 51
50% 247 308 57
40% 247 309 74
30% 247 309 97
Entity #9: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 255 23
95% 218 255 41
90% 220 259 40
70% 220 259 52
50% 284 369 36
40% 285 371 49
30% 294 408 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.