Sequence Similarity Clusters for the Entities in PDB 2F4V

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 91 192
95 % 221 254 45
90 % 221 254 50
70 % 221 254 59
50 % 254 342 37
40 % 254 342 48
30 % 278 416 42
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 220 252 35
95 % 221 253 48
90 % 221 253 53
70 % 221 253 63
50 % 260 348 28
40 % 260 348 38
30 % 284 420 36
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 254 33
95 % 221 254 44
90 % 221 254 49
70 % 221 254 58
50 % 254 342 36
40 % 280 421 22
30 % 280 422 35
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 206 45
95 % 221 261 35
90 % 221 261 39
70 % 254 353 23
50 % 254 354 27
40 % 254 354 37
30 % 254 354 56
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 255 30
95 % 221 255 41
90 % 221 255 46
70 % 221 255 55
50 % 257 347 33
40 % 257 347 45
30 % 281 421 41
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 253 34
95 % 221 253 49
90 % 221 253 54
70 % 221 254 61
50 % 221 254 86
40 % 221 254 106
30 % 221 254 119
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 257 27
95 % 225 262 34
90 % 225 262 38
70 % 225 262 49
50 % 261 355 26
40 % 261 356 36
30 % 261 356 55
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 249 36
95 % 221 254 46
90 % 221 254 51
70 % 221 254 60
50 % 221 254 85
40 % 221 255 105
30 % 257 345 63
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 87 223
95 % 218 248 50
90 % 220 252 55
70 % 220 252 64
50 % 220 252 88
40 % 220 252 108
30 % 220 252 121
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 51 598
95 % 196 219 63
90 % 196 219 68
70 % 196 219 78
50 % 196 219 108
40 % 196 219 129
30 % 196 219 142
Entity #2 | Chains: Z
5'-R(P*UP*UP*CP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 257 26
95 % 222 257 37
90 % 222 257 43
70 % 222 257 52
50 % 255 345 31
40 % 255 345 42
30 % 255 345 60
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 51 368
95 % 221 253 47
90 % 221 253 52
70 % 221 253 62
50 % 221 253 87
40 % 221 253 107
30 % 221 253 120
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 254 28
95 % 221 255 38
90 % 221 255 44
70 % 221 255 53
50 % 254 341 35
40 % 254 342 47
30 % 254 342 62
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 218 44
95 % 196 218 64
90 % 196 218 69
70 % 196 218 79
50 % 214 269 79
40 % 214 269 97
30 % 214 269 112
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 7895
95 % 221 255 39
90 % 221 255 45
70 % 221 255 54
50 % 254 342 34
40 % 254 343 44
30 % 254 343 61
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 254 32
95 % 221 254 43
90 % 221 254 48
70 % 221 254 57
50 % 255 346 30
40 % 255 346 41
30 % 255 348 57
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 259 24
95 % 229 265 33
90 % 229 265 36
70 % 229 265 44
50 % 229 265 82
40 % 229 265 100
30 % 246 304 78
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 258 25
95 % 222 259 36
90 % 222 259 41
70 % 222 259 50
50 % 243 304 51
40 % 243 305 63
30 % 243 305 87
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 220 254 29
95 % 220 254 40
90 % 222 258 42
70 % 222 258 51
50 % 257 348 29
40 % 258 350 39
30 % 283 425 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.