Sequence Similarity Clusters for the Entities in PDB 2F4V

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 91 200
95 % 227 269 47
90 % 227 269 50
70 % 227 269 59
50 % 267 379 36
40 % 267 379 45
30 % 294 473 36
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 226 267 37
95 % 227 268 50
90 % 227 268 53
70 % 227 268 64
50 % 273 385 26
40 % 273 385 37
30 % 300 476 29
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 269 35
95 % 227 269 46
90 % 227 269 49
70 % 227 269 58
50 % 267 379 35
40 % 296 470 19
30 % 296 471 32
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 217 47
95 % 227 276 35
90 % 227 276 39
70 % 267 390 21
50 % 267 391 25
40 % 267 391 36
30 % 267 391 55
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 270 33
95 % 227 270 43
90 % 227 270 47
70 % 227 270 56
50 % 270 384 31
40 % 270 384 43
30 % 297 477 35
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 268 36
95 % 227 268 51
90 % 227 268 54
70 % 227 269 61
50 % 227 269 87
40 % 227 269 107
30 % 227 269 117
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 272 28
95 % 231 277 34
90 % 231 277 38
70 % 231 277 49
50 % 274 392 23
40 % 274 393 35
30 % 274 393 53
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 264 38
95 % 227 269 48
90 % 227 269 51
70 % 227 269 60
50 % 227 269 86
40 % 227 270 106
30 % 270 382 62
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 87 232
95 % 224 263 52
90 % 226 267 55
70 % 226 267 65
50 % 226 267 90
40 % 226 267 109
30 % 226 267 119
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 51 635
95 % 202 234 62
90 % 202 234 66
70 % 202 234 77
50 % 202 234 103
40 % 202 234 129
30 % 202 234 139
Entity #2 | Chains: Z
5'-R(P*UP*UP*CP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 228 272 27
95 % 228 272 39
90 % 228 272 44
70 % 228 272 53
50 % 268 382 30
40 % 268 382 41
30 % 268 382 59
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 51 436
95 % 227 268 49
90 % 227 268 52
70 % 227 268 63
50 % 227 268 89
40 % 227 268 108
30 % 227 268 118
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 269 31
95 % 227 270 40
90 % 227 270 45
70 % 227 270 54
50 % 267 378 34
40 % 267 379 44
30 % 267 379 61
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 202 233 44
95 % 202 233 63
90 % 202 233 67
70 % 202 233 78
50 % 220 293 78
40 % 220 293 96
30 % 220 293 113
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8342
95 % 227 270 41
90 % 227 270 46
70 % 227 270 55
50 % 267 379 32
40 % 267 380 42
30 % 267 380 60
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 269 34
95 % 227 269 45
90 % 227 269 48
70 % 227 269 57
50 % 268 383 29
40 % 268 383 40
30 % 268 385 58
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 274 24
95 % 235 280 32
90 % 235 280 37
70 % 235 280 48
50 % 235 280 83
40 % 235 280 102
30 % 259 332 78
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 228 273 26
95 % 228 274 36
90 % 228 274 40
70 % 228 274 50
50 % 256 332 59
40 % 256 333 72
30 % 256 333 88
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 226 269 32
95 % 226 269 42
90 % 228 273 41
70 % 228 273 51
50 % 270 385 28
40 % 271 387 38
30 % 300 483 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.