Sequence Similarity Clusters for the Entities in PDB 2F4V

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 71 91 233
95 % 230 272 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 230 272 55
70 % 230 272 67
50 % 270 421 36
40 % 270 421 48
30 % 307 546 36
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 270 38
95 % 230 271 53 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 230 271 58
70 % 230 271 70
50 % 276 432 28
40 % 276 432 41
30 % 313 545 34
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 272 36
95 % 230 272 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 230 272 54
70 % 230 272 66
50 % 270 426 35
40 % 309 557 19
30 % 309 557 33
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 218 54
95 % 230 279 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 230 279 45
70 % 270 430 21
50 % 270 443 26
40 % 270 443 39
30 % 270 443 58
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 273 34
95 % 230 273 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 230 273 52
70 % 230 273 63
50 % 273 430 34
40 % 273 430 46
30 % 310 546 37
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 271 37
95 % 230 271 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 230 271 60
70 % 230 284 54
50 % 230 284 93
40 % 230 284 116
30 % 230 284 126
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 275 31
95 % 234 280 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 234 280 44
70 % 234 280 56
50 % 277 439 27
40 % 277 444 37
30 % 277 444 57
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 267 41
95 % 230 272 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 230 272 56
70 % 230 272 68
50 % 230 282 94
40 % 230 282 117
30 % 273 423 65
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 87 284
95 % 227 266 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 229 270 61
70 % 229 270 71
50 % 229 270 98
40 % 229 270 121
30 % 229 270 129
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 51 741
95 % 205 237 69 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 205 237 71
70 % 205 237 86
50 % 205 237 117
40 % 205 237 141
30 % 205 237 146
Entity #2 | Chains: Z
5'-R(P*UP*UP*CP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 231 275 30
95 % 231 275 43
90 % 231 275 49
70 % 231 275 60
50 % 271 432 30
40 % 271 435 42
30 % 271 435 59
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 51 545
95 % 230 271 52
90 % 230 271 57
70 % 230 271 69
50 % 230 271 97
40 % 230 271 119
30 % 230 271 128
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 272 32
95 % 230 273 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 230 273 50
70 % 230 273 61
50 % 270 419 37
40 % 270 424 47
30 % 270 424 64
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 205 236 49
95 % 205 236 70 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 205 236 72
70 % 205 236 87
50 % 223 310 86
40 % 223 310 106
30 % 223 310 120
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 9282
95 % 230 273 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 230 273 51
70 % 230 273 62
50 % 270 427 32
40 % 270 432 43
30 % 270 432 60
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 272 35
95 % 230 272 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 230 272 53
70 % 230 272 64
50 % 271 427 33
40 % 271 427 45
30 % 271 429 63
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 277 28
95 % 238 283 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 238 283 42
70 % 238 283 52
50 % 238 283 92
40 % 238 283 115
30 % 262 366 95
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 231 276 29
95 % 231 277 40 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 231 277 46
70 % 231 277 57
50 % 259 367 67
40 % 259 372 85
30 % 259 372 97
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 272 33
95 % 229 272 46
90 % 231 276 47
70 % 231 276 58
50 % 273 432 29
40 % 274 438 40
30 % 313 562 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures