Sequence Similarity Clusters for the Entities in PDB 2F4V

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1511 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 91 197
95 % 222 255 44
90 % 222 255 49
70 % 222 255 58
50 % 262 353 36
40 % 262 353 45
30 % 286 429 39
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 253 35
95 % 222 254 48
90 % 222 254 53
70 % 222 254 63
50 % 268 359 28
40 % 268 359 38
30 % 292 432 35
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 255 33
95 % 222 255 43
90 % 222 255 48
70 % 222 255 57
50 % 262 353 35
40 % 288 434 20
30 % 288 435 33
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 207 46
95 % 222 262 35
90 % 222 262 40
70 % 262 364 22
50 % 262 365 27
40 % 262 365 37
30 % 262 365 56
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 256 31
95 % 222 256 41
90 % 222 256 46
70 % 222 256 55
50 % 265 358 32
40 % 265 358 43
30 % 289 433 38
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 254 34
95 % 222 254 49
90 % 222 254 54
70 % 222 255 60
50 % 222 255 86
40 % 222 255 107
30 % 222 255 120
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 258 27
95 % 226 263 34
90 % 226 263 39
70 % 226 263 49
50 % 269 366 26
40 % 269 367 36
30 % 269 367 55
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 250 36
95 % 222 255 45
90 % 222 255 50
70 % 222 255 59
50 % 222 255 85
40 % 222 256 106
30 % 265 356 61
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 87 224
95 % 219 249 51
90 % 221 253 55
70 % 221 253 64
50 % 221 253 88
40 % 221 253 109
30 % 221 253 123
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 51 608
95 % 197 220 63
90 % 197 220 68
70 % 197 220 78
50 % 197 220 108
40 % 197 220 131
30 % 197 220 142
Entity #2 | Chains: Z
5'-R(P*UP*UP*CP*U)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 258 26
95 % 223 258 37
90 % 223 258 43
70 % 223 258 52
50 % 263 356 31
40 % 263 356 41
30 % 263 356 58
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 51 373
95 % 222 254 47
90 % 222 254 52
70 % 222 254 62
50 % 222 254 87
40 % 222 254 108
30 % 222 254 121
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 255 28
95 % 222 256 38
90 % 222 256 44
70 % 222 256 53
50 % 262 352 34
40 % 262 353 44
30 % 262 353 60
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 219 44
95 % 197 219 64
90 % 197 219 69
70 % 197 219 79
50 % 215 273 78
40 % 215 273 100
30 % 215 273 112
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 7989
95 % 222 256 39
90 % 222 256 45
70 % 222 256 54
50 % 262 353 33
40 % 262 354 42
30 % 262 354 59
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 255 32
95 % 222 255 42
90 % 222 255 47
70 % 222 255 56
50 % 263 357 30
40 % 263 357 40
30 % 263 359 57
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 260 24
95 % 230 266 33
90 % 230 266 36
70 % 230 266 45
50 % 230 266 83
40 % 230 266 102
30 % 254 312 77
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 259 25
95 % 223 260 36
90 % 223 260 41
70 % 223 260 50
50 % 251 312 52
40 % 251 313 64
30 % 251 313 85
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 255 30
95 % 221 255 40
90 % 223 259 42
70 % 223 259 51
50 % 265 359 29
40 % 266 361 39
30 % 291 438 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.